This glossary of cellular and molecular biology is a list of definitions of terms and concepts commonly used in the study of cell biology, molecular biology, and related disciplines, including molecular genetics, biochemistry, and microbiology. It is split across two articles:
Glossary of cellular and molecular biology (0–L) lists terms beginning with numbers and those beginning with the letters A through L. Glossary of cellular and molecular biology (M–Z) (this page) lists terms beginning with the letters M through Z. This glossary is intended as introductory material for novices (for more specific and technical detail, see the article corresponding to each term). It has been designed as a companion to Glossary of genetics and evolutionary biology, which contains many overlapping and related terms; other related glossaries include Glossary of virology and Glossary of chemistry.
M
M phase See mitosis.
macromolecule Any very large molecule composed of dozens, hundreds, or thousands of covalently bonded atoms, especially one with biological significance. Many important biomolecules, such as nucleic acids and proteins, are polymers consisting of a repeated series of smaller monomers; others such as lipids and carbohydrates may not be polymeric but are nevertheless large and complex molecules.
macronucleus Also meganucleus. The larger of the two types of nuclei which occur in pairs in the cells of some ciliated protozoa. Macronuclei are highly polyploid and responsible for directing vegetative reproduction, in contrast to the diploid micronuclei, which have important functions during conjugation.
macrophage Any of a class of relatively long-lived phagocytic cells of the mammalian immune system which are activated in response to the presence of foreign materials in certain tissues and subsequently play important roles in antigen presentation, stimulating other types of immune cells, and killing or engulfing parasitic microorganisms, diseased cells, or tumor cells.
major groove
map-based cloning See positional cloning.
massively parallel sequencing Also next-generation sequencing (NGS) and second-generation sequencing.
medical genetics The branch of medicine and medical science that involves the study, diagnosis, and management of hereditary disorders, and more broadly the application of knowledge about human genetics to medical care.
megabase (Mb) A unit of nucleic acid length equal to one million (1×106) bases in single-stranded molecules or one million base pairs in duplex molecules such as double-stranded DNA.
meiosis A specialized type of cell division that occurs exclusively in sexually reproducing eukaryotes, during which DNA replication is followed by two consecutive rounds of division to ultimately produce four genetically unique haploid daughter cells, each with half the number of chromosomes as the original diploid parent cell. Meiosis only occurs in cells of the sex organs, and serves the purpose of generating haploid gametes such as sperm, eggs, or spores, which are later fused during fertilization. The two meiotic divisions, known as Meiosis I and Meiosis II, may also include various genetic recombination events between homologous chromosomes.
meiotic spindle See spindle apparatus.
melting The denaturation of a double-stranded nucleic acid into two single strands, especially in the context of the polymerase chain reaction.
membrane A supramolecular aggregate of amphipathic lipid molecules which when suspended in a polar solvent tend to arrange themselves into structures which minimize the exposure of their hydrophobic tails by sheltering them within a ball created by their own hydrophilic heads (i.e. a micelle). Certain types of lipids, specifically phospholipids and other membrane lipids, commonly occur as double-layered sheets of molecules when immersed in an aqueous environment, which can themselves assume approximately spherical shapes, acting as semipermeable barriers surrounding a water-filled interior space. This is the basic structure of the biological membranes enclosing all cells, vesicles, and membrane-bound organelles.
membrane lipid
membrane potential
membrane protein Any protein that is closely associated either transiently or permanently with the lipid bilayer membrane surrounding a cell, organelle, or vesicle.
membrane-bound organelle An organelle or cellular compartment enclosed by its own dedicated lipid membrane, separating its interior from the rest of the cytoplasm.
messenger RNA (mRNA) Any of a class of single-stranded RNA molecules which function as molecular messengers, carrying sequence information encoded in the DNA genome to the ribosomes where protein synthesis occurs. The primary products of transcription, mRNAs are synthesized by RNA polymerase, which builds a chain of ribonucleotides that complement the deoxyribonucleotides of a DNA template; in this way, the DNA sequence of a protein-coding gene is effectively preserved in the raw transcript, which is subsequently processed into a mature mRNA by a series of post-transcriptional modifications.
metabolic pathway A stepwise series of biochemical reactions occurring within a cell, often but not necessarily catalyzed by specific enzymes, that fulfills some activity or process related to metabolism. The reactions are linked by the sharing of reactants, products, or intermediate compounds in consecutive steps, such that the product of one reaction is used as a reactant in a subsequent reaction. Byproducts are often removed from the cell as metabolic waste. The overall pathway may be anabolic, catabolic, or amphibolic in nature. In any actively metabolizing cell, an elaborate network of interconnected metabolic pathways is required to maintain homeostasis, with degradative catabolic processes providing the energy necessary to conduct anabolic biosynthesis; for example, glycolysis, the electron transport chain, and oxidative phosphorylation provide the ATP used in fatty acid synthesis. The flux of metabolites through each pathway is regulated by the needs of the cell and the availability of substrates.
metabolic waste
metabolism The complete set of chemical reactions which sustain and account for the basic processes of life in all living cells, especially those involving: 1) the conversion of energy from food into energy available for cellular activities; 2) the breakdown of food into simpler compounds which can then be used as substrates to build complex biomolecules such as proteins, lipids, and nucleic acids; and 3) the degradation and excretion of toxins, byproducts, and other unusable compounds known as metabolic wastes. In a broader sense the term may include all chemical reactions occurring in living organisms, even those which are not strictly necessary for life but instead serve accessory functions. Many specific cellular activities are accomplished by metabolic pathways in which one chemical is ultimately transformed through a stepwise series of reactions into another chemical, with each reaction catalyzed by a specific enzyme. Most metabolic reactions can be subclassified as catabolic or anabolic.
metabolite An intermediate or end product of metabolism, especially degradative metabolism (catabolism); or any substance produced by or taking part in a metabolic reaction. Metabolites include a huge variety of small molecules generated by cells from various pathways and having various functions, including as inputs to other pathways and reactions, as signaling molecules, and as stimulators, inhibitors, and cofactors of enzymes. Metabolites may result from the degradation and elimination of naturally occurring compounds as well as of synthetic compounds such as pharmaceuticals.
metabolome The complete set of small-molecule chemical compounds within a cell, organelle, or any other biological sample, including both endogenous molecules (e.g. individual amino acids and nucleotides, fatty acids, organic acids, amines, simple sugars, vitamins, antibiotics, etc.) and exogenous molecules (e.g. drugs, toxins, environmental contaminants, and other xenobiotics).
metacentric (of a linear chromosome or chromosome fragment) Having a centromere positioned in the middle of the chromosome, resulting in chromatid arms of approximately equal length.
metaphase The stage of mitosis and meiosis that occurs after prometaphase and before anaphase, during which the centromeres of the replicated chromosomes align along the equator of the cell, with each kinetochore attached to the mitotic spindle.
methylation The covalent attachment of a methyl group (–CH3) to a chemical compound, protein, or other biomolecule, either spontaneously or by enzymatic catalysis. Methylation is one of the most widespread natural mechanisms by which nucleic acids and proteins are labelled. The methylation of nucleobases in a DNA molecule inhibits recognition of the methylated sequence by DNA-binding proteins, which can effectively silence the expression of genes. Specific residues within histones are also commonly methylated, which can change nucleosome positioning and similarly activate or repress nearby loci. The opposite reaction is demethylation.
methyltransferase Any of a class of transferase enzymes which catalyze the covalent bonding of a methyl group (–CH3) to another compound, protein, or biomolecule, a process known as methylation.
MicroArray and Gene Expression (MAGE) A group that "aims to provide a standard for the representation of DNA microarray gene expression data that would facilitate the exchange of microarray information between different data systems".
microbody Any of a diverse class of small membrane-bound organelles or vesicles found in the cells of many eukaryotes, especially plants and animals, usually having some specific metabolic function and occurring in great numbers in certain specialized cell types. Peroxisomes, glyoxysomes, glycosomes, and hydrogenosomes are often considered microbodies.
microchromosome A type of very small chromosome, generally less than 20,000 base pairs in size, present in the karyotypes of some organisms.
microdeletion A chromosomal deletion that is too short to cause any apparent change in morphology under a light microscope, though it may still be detectable with other methods such as sequencing.
microfilament A long, thin, flexible, rod-like structure composed of polymeric strands of proteins, usually actins, that occurs in abundance in the cytoplasm of eukaryotic cells, forming part of the cytoskeleton. Microfilaments comprise the cell's structural framework. They are modified by and interact with numerous other cytoplasmic proteins, playing important roles in cell stability, motility, contractility, and facilitating changes in cell shape, as well as in cytokinesis.
micronucleus The smaller of the two types of nuclei that occur in pairs in the cells of some ciliated protozoa. Whereas the larger macronucleus is polyploid, the micronucleus is diploid and generally transcriptionally inactive except for the purpose of sexual reproduction, where it has important functions during conjugation.
microRNA (miRNA) A type of small, single-stranded, non-coding RNA molecule that functions in post-transcriptional regulation of gene expression, particularly RNA silencing, by base-pairing with complementary sequences in mRNA transcripts, which typically results in the cleavage or destabilization of the transcript or inhibits its translation by ribosomes.
microsatellite Also short tandem repeat (STR) or simple sequence repeat (SSR). A type of satellite DNA consisting of a relatively short sequence of tandem repeats, in which certain motifs (ranging in length from one to six or more bases) are repeated, typically 5–50 times. Microsatellites are widespread throughout most organisms' genomes and tend to have higher mutation rates than other regions. They are classified as variable number tandem repeat (VNTR) DNA, along with longer minisatellites.
microsome A small intracellular vesicle derived from fragments of endoplasmic reticulum observed in cells which have been homogenized.
microspike See filopodium.
microtome An instrument used to cut extremely thin slices of material, known as microsections or simply sections, preparatory to observation under a microscope. Sections of tissues and cells are usually 50 nanometres (nm) to 100 micrometres (μm) in width. The process of cutting them is known as microtomy.
microtrabecula (pl.) microtrabeculae A fine protein filament of the cytoskeleton. Multiple filaments form the microtrabecular network.
microtubule Any of the long, generally straight, hollow tubes, about 24 nanometers in diameter and composed of interwoven polymeric filaments of the protein tubulin, found in the cytoplasm of many eukaryotic cells, where they are involved in maintaining the cell's shape and structural integrity as well as in force generation for cellular or organellar locomotion (as with cilia and flagella). They also comprise the spindle apparatus critical to mitosis and meiosis. Microtubules are rigid but transient all-purpose structural members which can be rapidly assembled and disassembled at the cell's needs. Many different microtubule-associated proteins interact with them. See also microfilament.
microtubule-organizing center (MTOC) A region near the center of a eukaryotic cell typically consisting of two centrioles oriented at right angles to each other and surrounded by a complex of associated proteins, which functions as the site of initiation for the assembly of microtubules.
microvesicle Also ectosome and microparticle. A type of extracellular vesicle released when an evagination of the cell membrane "buds off" into the extracellular space. Microvesicles vary in size from 30–1,000 nanometres in diameter and are thought to play roles in many physiological processes, including intercellular communication by shuttling molecules such as RNA and proteins between cells.
microvillus A small, slender, tubular cytoplasmic projection, generally 0.2–4 micrometres long and 0.1 micrometres in diameter, protruding from the surface of some animal cells and supported by a central core of microfilaments. When present in large numbers, such as on epithelial cells lining the respiratory and alimentary tracts, they form a dense brush border which presumably serves to increase each cell's absorptive surface area.
mid body The centrally constricted region that forms across the central axis of a cell during cytokinesis, constricted by the closing of the contractile ring until the daughter cells are finally separated, but occasionally persisting as a tether between the two cells for as long as a complete cell cycle.
middle lamella In plant cells, the outermost layer of the cell wall; a continuous, unified layer of extracellular pectins which is the first layer deposited by the cell during cytokinesis and which serves to cement together the primary cell walls of adjacent cells.
Minimal information about a high-throughput sequencing experiment (MINSEQE) A commercial standard developed by FGED for the storage and sharing of high-throughput sequencing data.
Minimum information about a microarray experiment (MIAME) A commercial standard developed by FGED and based on MAGE in order to facilitate the storage and sharing of gene expression data.
minisatellite A region of repetitive, non-coding genomic DNA in which certain DNA motifs (typically 10–60 bases in length) are tandemly repeated (typically 5–50 times). In the human genome, minisatellites occur at more than 1,000 loci, especially in centromeres and telomeres, and exhibit high mutation rates and high variability between individuals. Like the shorter microsatellites, they are classified as variable number tandem repeats (VNTRs) and are a type of satellite DNA.
minor groove
minus-strand See template strand.
miRNA See microRNA.
mismatch Also mispairing. An incorrect pairing of nucleobases on complementary strands of DNA or RNA; i.e. the presence in one strand of a duplex molecule of a base that is not complementary (by Watson–Crick pairing rules) to the base occupying the corresponding position in the other strand, which prevents normal hydrogen bonding between the bases. For example, a guanine paired with a thymine would be a mismatch, as guanine normally pairs with cytosine.
mismatch repair (MMR)
missense mutation A type of point mutation which results in a codon that codes for a different amino acid than in the unmutated sequence. Compare nonsense mutation.
mistranslation The insertion of an incorrect amino acid in a growing peptide chain during translation, i.e. the inclusion of any amino acid that is not the one specified by a particular codon in an mRNA transcript. Mistranslation may originate from a mischarged transfer RNA or from a malfunctioning ribosome.
mitochondrial DNA (mtDNA) The set of DNA molecules contained within mitochondria, usually one or more circular plasmids representing a semi-autonomous genome which is physically separate from and functionally independent of the chromosomal DNA in the cell's nucleus. The mitochondrial genome encodes many unique enzymes found only in mitochondria.
mitochondrial fusion
mitochondrion (pl.) mitochondria; also formerly chondriosome. A highly pleiomorphic membrane-bound organelle found in the cytoplasm of nearly all eukaryotic cells, usually in large numbers in the form of sausage-shaped structures 5–10 micrometres in length, enclosed by a double membrane, with the inner membrane infolded in an elaborate series of cristae so as to maximize surface area. Mitochondria are the primary sites of ATP synthesis, where ATP is regenerated from ADP via oxidative phosphorylation, as well as many supporting pathways, including the citric acid cycle and the electron transport chain. Like other plastids, mitochondria contain their own genome encoded in circular DNA molecules which replicate independently of the nuclear genome, as well as their own unique set of transcription factors, polymerases, ribosomes, transfer RNAs, and aminoacyl-tRNA synthetases with which to direct transcription and translation of their genes. The majority of the structural proteins found in mitochondria are encoded by nuclear genes, however, such that mitochondria are only partially autonomous. These observations suggest mitochondria evolved from symbiotic prokaryotes living inside eukaryotic cells.
mitogen Any substance or stimulus that promotes or induces mitosis, or more generally which causes cells to re-enter the cell cycle.
mitophagy The selective degradation of mitochondria by means of autophagy; i.e. the mitochondrion initiates its own degradation. Mitophagy is a regular process in healthy populations of cells by which defective or damaged mitochondria are recycled, preventing their accumulation. It may also occur in response to the changing metabolic needs of the cell, e.g. during certain developmental stages.
mitosis Also M phase. In eukaryotic cells, the part of the cell cycle during which the division of the nucleus takes place and replicated chromosomes are separated into two distinct nuclei. Mitosis is generally preceded by the S phase of interphase, when the cell's DNA is replicated, and either occurs simultaneously with or is followed by cytokinesis, when the cytoplasm and plasma membrane are divided into two new daughter cells. Colloquially, the term "mitosis" is often used to refer to the entire process of cell division, not just the division of the nucleus.
mitotic index (MI) The proportion of cells within a sample which are undergoing mitosis at the time of observation, typically expressed as a percentage or as a value between 0 and 1. The number of cells dividing by mitosis at any given time can vary widely depending on organism, tissue, developmental stage, and culture media, among other factors.
mitotic recombination Also somatic crossing over. The abnormal exchange of genetic material between homologous chromosomes during mitosis (as opposed to meiosis, where it occurs normally). Homologous recombination during mitosis is relatively uncommon; in the laboratory, it can be induced by exposing dividing cells to high-energy electromagnetic radiation such as X rays. As in meiosis, it can separate heterozygous alleles and thereby propagate potentially significant changes in zygosity to daughter cells, though unless it occurs very early in development this often has little or no phenotypic effect, since any phenotypic variance shown by mutant lineages arising in terminally differentiated cells is generally masked or compensated for by neighboring wild-type cells.
mitotic rounding The process by which most animal cells undergo an overall change in shape during or preceding mitosis, abandoning the various complex or elongated shapes characteristic of interphase and rapidly contracting into a rounded or spherical morphology that is more conducive to cell division. This phenomenon has been observed both in vivo and in vitro.
mitotic segregation
mitotic spindle See spindle apparatus.
mixoploidy The presence of more than one different ploidy level, i.e. more than one number of sets of chromosomes, in different cells of the same cellular population.
mobile genetic element (MGE) Any genetic material that can move between different parts of a genome or be transferred from one species or replicon to another within a single generation. The many types of MGEs include transposable elements, bacterial plasmids, bacteriophage elements which integrate into host genomes by viral transduction, and self-splicing introns.
mobilome The complete set of mobile genetic elements within a particular genome, cell, species, or other taxon, including all transposons, plasmids, prophages, and other self-splicing nucleic acid molecules.
molecular biology The branch of biology that studies biological activity at the molecular level, in particular the various mechanisms underlying the biological processes that occur in and between cells, including the structures, properties, synthesis, and modification of biomolecules such as proteins and nucleic acids, their interactions with the chemical environment and with other biomolecules, and how these interactions explain the observations of classical biology (which in contrast studies biological systems at much larger scales). Molecular biology relies largely on laboratory techniques of physics and chemistry to manipulate and measure microscopic phenomena. It is closely related to and overlaps with the fields of cell biology, biochemistry, and molecular genetics.
molecular cloning Any of various molecular biology methods designed to replicate a particular molecule, usually a DNA sequence or a protein, many times inside the cells of a natural host. Commonly, a recombinant DNA fragment containing a gene of interest is ligated into a plasmid vector, which competent bacterial cells are then induced to uptake in a process known as transformation. The bacteria, carrying the recombinant plasmid, are then allowed to proliferate naturally in cell culture, so that each time the bacterial cells divide, the plasmids are replicated along with the rest of the bacterial genome. Any functioning gene of interest within the plasmid will be expressed by the bacterial cells, and thereby its gene products will also be cloned. The plasmids or gene products, which now exist in many copies, may then be extracted from the bacteria and purified. Molecular cloning is a fundamental tool of genetic engineering employed for a wide variety of purposes, often to study gene expression, to amplify a specific gene product, or to generate a selectable phenotype.
molecular genetics A branch of genetics that employs methods and techniques of molecular biology to study the structure and function of genes and gene products at the molecular level. Contrast classical genetics.
monad A haploid set of chromosomes as it exists inside the nucleus of an immature gametic cell such as an ootid or spermatid, i.e. a cell which is a product of meiosis but is not yet a mature gamete.
monocentric (of a linear chromosome or chromosome fragment) Having only one centromere. Contrast dicentric and holocentric.
monoclonal Describing cells, proteins, or molecules descended or derived from a single clone (i.e. from the same genome or genetic lineage) or made in response to a single unique compound. Monoclonal antibodies are raised against only one antigen or can only recognize one unique epitope on the same antigen. Similarly, the cells of some tissues and neoplasms may be described as monoclonal if they are all the asexual progeny of one original parent cell. Contrast polyclonal.
monocyte A type of large leukocyte of the mononuclear phagocyte system in mammals, characterized by pale-staining cytoplasm and a kidney-shaped or horseshoe-shaped nucleus. Monocytes are derived from pluripotent stem cells in bone marrow and become macrophages in other tissues.
monokaryotic (of a cell) Having a single nucleus, as opposed to no nucleus or multiple nuclei.
monomer A molecule or compound which can exist individually or serve as a building block or subunit of a larger macromolecular aggregate known as a polymer. Polymers form when multiple monomers of the same or similar molecular species are connected to each other by chemical bonds, either in a linear chain or a non-linear conglomeration. Examples include the individual nucleotides which form nucleic acid polymers, the individual amino acids which form polypeptides, and the individual proteins which form protein complexes.
monoploid
monosaccharide Any of a class of organic compounds which are the simplest forms of carbohydrates and the most basic structural subunits or monomers from which larger carbohydrate polymers such as disaccharides, oligosaccharides, and polysaccharides are composed. With few exceptions, all monosaccharides are variations on the empirical formula (CH2O)n, where n typically ranges from 3 (trioses) to 7 (heptoses). Common examples include glucose, ribose, and deoxyribose.
monosomy The abnormal and frequently pathological presence of only one chromosome of a normal diploid pair. It is a type of aneuploidy.
Morpholino Also phosphorodiamidate Morpholino oligomer. A synthetic nucleic acid analogue connecting a short sequence of nucleobases into an artificial antisense oligomer, used in genetic engineering to knockdown gene expression by pairing with complementary sequences in naturally occurring RNA or DNA molecules, especially mRNA transcripts, thereby inhibiting interactions with other biomolecules such as proteins and ribosomes. Morpholino oligomers are not themselves translated, and neither they nor their hybrid duplexes with RNA are attacked by nucleases; also, unlike the negatively charged phosphates of normal nucleic acids, the synthetic backbones of Morpholinos are electrically neutral, making them less likely to interact non-selectively with a host cell's charged proteins. These properties make them useful and reliable tools for artificially generating mutant phenotypes in living cells.
mosaicism The presence of two or more populations of cells with different genotypes in an individual organism which has developed from a single fertilized egg. A mosaic organism can result from many kinds of genetic phenomena, including nondisjunction of chromosomes, endoreduplication, or mutations in individual stem cell lineages during the early development of the embryo. Mosaicism is similar to but distinct from chimerism.
motif Any distinctive or recurring sequence of nucleotides in a nucleic acid or of amino acids in a peptide that is or is conjectured to be biologically significant, especially one that is reliably recognized by other biomolecules or which has a three-dimensional structure that permits unique or characteristic chemical interactions such as DNA binding. In nucleic acids, motifs are often short (three to ten nucleotides in length), highly conserved sequences which act as recognition sites for DNA-binding proteins or RNAs involved in the regulation of gene expression.
motor protein Any protein which converts chemical energy derived from the hydrolysis of nucleoside triphosphates such as ATP and GTP into mechanical work in order to effect its own locomotion, by propelling itself along a filament or through the cytoplasm.
mRNA See messenger RNA.
mtDNA See mitochondrial DNA.
multicellular Composed of more than one cell. The term is used especially to describe organisms or tissues consisting of many cells descendant from the same original parent cell which work together in an organized way, but may also describe groups of nominally single-celled organisms such as protists and bacteria which live symbiotically with each other in large colonies. Contrast unicellular.
multimer An aggregate of two or more molecular entities, identical or non-identical, held together by non-covalent forces; e.g. a protein complex.
multinucleate (of a cell) Having more than one nucleus within a single cell; i.e. having multiple nuclei occupying the same cytoplasm.
multiomics The integration of data from multiple "omics" technologies (e.g. data from the genome, epigenome, transcriptome, proteome, metabolome, etc.) in order to study complex biological relationships, discover novel associations between biological entities, pinpoint relevant biomarkers, or build elaborate models of physiology and disease.
multiple cloning site (MCS) Also polylinker. A locus or sequence within a plasmid vector which contains multiple unique restriction sites recognized by various restriction endonucleases, which makes it possible for scientists to target the insertion of a DNA fragment (often a gene cassette) specifically to that locus and in the desired orientation, by digesting the insert and the vector with the same endonuclease(s) and then ligating them together via compatible restriction ends, a technique known as restriction cloning. Commercial plasmids designed for cloning commonly incorporate one or more multiple cloning sites.
mutagen Any physical or chemical agent that changes the genetic material (usually DNA) of an organism and thereby increases the frequency of mutations above natural background levels.
mutagenesis 1. The process by which the genetic information of an organism is changed, resulting in a mutation. Mutagenesis may occur spontaneously or as a result of exposure to a mutagen. 2. In molecular biology, any laboratory technique by which one or more genetic mutations are deliberately engineered in order to produce a mutant gene, regulatory element, gene product, or genetically modified organism so that the functions of a genetic locus, process, or product can be studied in detail.
mutant An organism, gene product, or phenotypic trait resulting from a mutation, of a type that would not be observed naturally in wild-type specimens.
mutation Any permanent change in the nucleotide sequence of a strand of DNA or RNA, or in the amino acid sequence of a peptide. Mutations play a role in both normal and abnormal biological processes; their natural occurrence is integral to the process of evolution. They can result from errors in replication, chemical damage, exposure to high-energy radiation, or manipulations by mobile genetic elements. Repair mechanisms have evolved in many organisms to correct them. By understanding the effect that a mutation has on phenotype, it is possible to establish the function of the gene or sequence in which it occurs.
mutator gene Any mutant gene or sequence that increases the spontaneous mutation rate of one or more other genes or sequences. Mutators are often transposable elements, or may be mutant housekeeping genes such as those that encode helicases or proteins involved in proofreading.
mutein A mutant protein, i.e. a protein whose amino acid sequence differs from that of the normal because of a mutation.
muton The smallest unit of a DNA molecule in which a physical or chemical change can result in a mutation (conventionally a single nucleotide).
N
n orientation One of two possible orientations by which a linear DNA fragment can be inserted into a vector, specifically the one in which the gene maps of both fragment and vector have the same orientation. Contrast u orientation.
NAD See nicotinamide-adenine dinucleotide.
NADP See nicotinamide-adenine dinucleotide phosphate.
nanoinjection A laboratory technique involving the use of a microscopic lance or nanopipette (typically about 100 nanometres in diameter) in the presence of an electric field in order to deliver DNA or RNA directly into a cell, often a zygote or early embryo, via an electrophoretic mechanism. While submerged in a pH-buffered solution, a positive electric charge is applied to the lance, attracting negatively charged nucleic acids to its surface; the lance then penetrates the cell membrane and the electric field is reversed, applying a negative charge which repels the accumulated nucleic acids away from the lance and thus into the cell. Compare microinjection.
nascent In the process of being synthesized; incomplete; not yet fully processed or mature. The term is commonly used to describe strands of DNA or RNA which are actively undergoing synthesis during replication or transcription, or sometimes a complete, fully transcribed RNA molecule before any post-transcriptional modifications have been made (e.g. polyadenylation or RNA editing), or a peptide chain actively undergoing translation by a ribosome.
ncAA See non-canonical amino acid.
ncDNA See non-coding DNA.
ncRNA See non-coding RNA.
negative (-) sense strand See template strand.
negative control Also negative regulation. The inhibition or deactivation of some biological process caused by the presence of a specific molecular entity (e.g. a repressor), in the absence of which the process is not inhibited and thus can proceed normally. In gene regulation, for example, a repressor may bind to an operator upstream from a coding sequence and prevent access by transcription factors and/or RNA polymerase, thereby blocking the gene's transcription. This is contrasted with positive control, in which the presence of an inducer is necessary to switch on transcription.
negative supercoiling The supercoiling of a double-stranded DNA molecule in the direction opposite to the turn of the double helix itself (e.g. a left-handed coiling of a helix with a right-handed turn). Contrast positive supercoiling.
next-generation sequencing (NGS) See massively parallel sequencing.
nick A break or discontinuity in the phosphate backbone of one strand of a double-stranded DNA molecule, i.e. where a phosphodiester bond is hydrolyzed but no nucleotides are removed; such a molecule is said to be nicked. A nick is a single-strand break, where despite the break the DNA molecule is not ultimately broken into multiple fragments, which contrasts with a cut, where both strands are broken. Nicks may be caused by DNA damage or by dedicated nucleases known as nicking enzymes, which nick DNA at random or specific sites. Nicks are frequently placed by the cell as markers identifying target sites for enzyme activity, including in DNA replication, transcription, and mismatch repair, and also to release torsional stress from overwound DNA molecules, making them important in manipulating DNA topology.
nick translation
nickase Another name for a nicking enzyme, especially one that has been artificially engineered to create single-stranded breaks (i.e. nicks) by altering the cleavage activity of an endonuclease that normally creates double-stranded breaks, e.g. Cas9 nickase (nCas9).
nicking enzyme Also nicking endonuclease and nickase. Any of a class of endonuclease enzymes capable of generating a single-stranded break in a double-stranded DNA molecule, i.e. a nick, either at random or at a specific recognition sequence, by breaking a phosphodiester bond linking adjacent nucleotides.
nicotinamide adenine dinucleotide (NAD)
nicotinamide adenine dinucleotide phosphate (NADP+, NADP)
nitrogenous base Sometimes used interchangeably with nucleobase or simply base. Any organic compound containing a nitrogen atom that has the chemical properties of a base. Five particular nitrogenous bases – adenine (A), guanine (G), cytosine (C), thymine (T), and uracil (U) – are especially relevant to biology because they are components of nucleotides, which are the primary monomers that make up nucleic acids.
non-canonical amino acid (ncAA) Also non-standard amino acid. Any amino acid, natural or artificial, that is not one of the 20 or 21 proteinogenic amino acids encoded by the standard genetic code. There are hundreds of such amino acids, many of which have biological functions and are specified by alternative codes or incorporated into proteins accidentally by errors in translation. Many of the best known naturally occurring ncAAs occur as intermediates in the metabolic pathways leading to the standard amino acids, while others have been made synthetically in the laboratory.
non-coding DNA (ncDNA) Any segment of DNA that does not encode a sequence that may ultimately be transcribed and translated into a protein. In most organisms, only a small fraction of the genome consists of protein-coding DNA, though the proportion varies greatly between species. Some non-coding DNA may still be transcribed into functional non-coding RNA (as with transfer RNAs) or may serve important developmental or regulatory purposes; other regions (as with so-called "junk DNA") appear to have no known biological function.
non-coding RNA (ncRNA) Any molecule of RNA that is not ultimately translated into a protein. The DNA sequence from which a functional non-coding RNA is transcribed is often referred to as an "RNA gene". Numerous types of non-coding RNAs essential to normal genome function are produced constitutively, including transfer RNA (tRNA), ribosomal RNA (rRNA), microRNA (miRNA), and small interfering RNA (siRNA); other non-coding RNAs (sometimes described as "junk RNA") have no known function and are likely the product of spurious transcription.
non-coding strand See template strand.
nondisjunction The failure of homologous chromosomes or sister chromatids to segregate properly during cell division. Nondisjunction results in daughter cells that are aneuploid, containing abnormal numbers of one or more specific chromosomes. It may be caused by a variety of factors.
non-homologous end joining (NHEJ)
nonrepetitive sequence Broadly, any nucleotide sequence or region of a genome that does not contain repeated sequences, or in which repeats do not comprise a majority; or any segment of DNA exhibiting the reassociation kinetics expected of a unique sequence.
nonsense mutation Also point-nonsense mutation. A type of point mutation which results in a premature stop codon in the transcribed mRNA sequence, thereby causing the premature termination of translation, which results in a truncated, incomplete, and often non-functional protein.
nonsense suppressor A factor which can inhibit the effects of a nonsense mutation (i.e. a premature stop codon) by any mechanism, usually either a mutated transfer RNA which can bind the mutated stop codon or some kind of ribosomal mutation.
nonsynonymous mutation Also nonsynonymous substitution or replacement mutation. A type of mutation in which the substitution of one nucleotide base for another results, after transcription and translation, in an amino acid sequence that is different from that produced by the original unmutated gene. Because nonsynonymous mutations always result in a biological change in the organism, they are often subject to strong selection pressure. Contrast synonymous mutation.
non-transcribed spacer (NTS) See spacer.
northern blotting A blotting method in molecular biology used to detect RNA in a sample. Compare Southern blo