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Glucose-6-phosphate isomerase

Glucose-6-phosphate isomerase is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Glucose-6-phosphate isomerase rather than just read about it. In short: Glucose-6-phosphate isomerase (GPI), alternatively known as phosphoglucose isomerase/phosphoglucoisomerase (PGI) or phosphohexose isomerase (PHI), is an enzyme ( EC 5.3.1.9) that in humans is encoded by the GPI gene on chromosome 19. This gene encodes a member of the glucose phosphate isomerase protein family.

Glucose-6-phosphate isomerase — main illustration
Glucose-6-phosphate isomerase — illustration

Key takeaways

  • Glucose-6-phosphate isomerase belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Glucose-6-phosphate isomerase to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Glucose-6-phosphate isomerase from memory before moving on to harder problems.

Reference excerpt

Glucose-6-phosphate isomerase (GPI), alternatively known as phosphoglucose isomerase/phosphoglucoisomerase (PGI) or phosphohexose isomerase (PHI), is an enzyme ( EC 5.3.1.9) that in humans is encoded by the GPI gene on chromosome 19. This gene encodes a member of the glucose phosphate isomerase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. In the cytoplasm, the gene product functions as a glycolytic enzyme (glucose-6-phosphate isomerase) that interconverts glucose-6-phosphate (G6P) and fructose-6-phosphate (F6P). Extracellularly, the encoded protein (also referred to as neuroleukin) functions as a neurotrophic factor that promotes survival of skeletal motor neurons and sensory neurons, and as a lymphokine that induces immunoglobulin secretion. The encoded protein is also referred to as autocrine motility factor (AMF) based on an additional function as a tumor-secreted cytokine and angiogenic factor. Defects in this gene are the cause of nonspherocytic hemolytic anemia, and a severe enzyme deficiency can be associated with hydrops fetalis, immediate neonatal death and neurological impairment. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

Structure Functional GPI is a 64-kDa dimer composed of two identical monomers. The two monomers interact notably through the two protrusions in a hugging embrace. The active site of each monomer is formed by a cleft between the two domains and the dimer interface. GPI monomers are made of two domains, one made of two separate segments called the large domain and the other made of the segment in between called the small domain. The two domains are each αβα sandwiches, with the small domain containing a five-strand β-sheet surrounded by α-helices while the large domain has a six-stranded β-sheet. The large domain, located at the N-terminal, and the C-terminal of each monomer also contain "arm-like" protrusions. Several residues in the small domain serve to bind phosphate, while other residues, particularly His388, from the large and C-terminal domains are crucial to the sugar ring-opening step catalyzed by this enzyme. Since the isomerization activity occurs at the dimer interface, the dimer structure of this enzyme is critical to its catalytic function. It is hypothesized that serine phosphorylation of this protein induces a conformational change to its secretory form.

Mechanism The mechanism that GPI uses to interconvert glucose 6-phosphate and fructose 6-phosphate (aldose to ketose) consists of three major steps: opening the glucose ring, isomerizing glucose into fructose through an enediol intermediate, and closing the fructose ring.

Isomerization of glucose

Compound C00668 at KEGG Pathway Database. Enzyme 5.3.1.9 at KEGG Pathway Database. Compound C05345 at KEGG Pathway Database. Reaction R00771 at KEGG Pathway Database. Glucose 6-phosphate binds to GPI in its pyranose form. The ring is opened in a "push-pull" mechanism by His388, which protonates the C5 oxygen, and Lys518, which deprotonates the C1 hydroxyl group. This creates an open chain aldose. Then, the substrate is rotated about the C3-C4 bond to position it for isomerization. At this point, Glu357 deprotonates C2 to create a cis-enediolate intermediate stabilized by Arg272. To complete the isomerization, Glu357 donates its proton to C1, the C2 hydroxyl group loses its proton and the open-chain ketose fructose 6-phosphate is formed. Finally, the ring is closed by rotating the substrate about the C3-C4 bond again and deprotonating the C5 hydroxyl with Lys518. When going from fructose-6-phosphate toward glucose-6-phosphate, the result could be mannose-6-phosphate if carbon C2 is given the wrong chirality, but the enzyme does not permit that result except at a very low, non-physiological, rate.

Function This gene belongs to the GPI family. The protein encoded by this gene is a dimeric enzyme that catalyzes the reversible isomerization of G6P and F6P. Since the reaction is reversible, its direction is determined by G6P and F6P concentrations. glucose 6-phosphate ⇌ fructose 6-phosphate The protein has different functions inside and outside the cell. In the cytoplasm, the protein is involved in glycolysis and gluconeogenesis, as well as the pentose phosphate pathway. Outside the cell, it functions as a neurotrophic factor for spinal and sensory neurons, called neuroleukin. The same protein is also secreted by cancer cells, where it is called autocrine motility factor and stimulates metastasis. Extracellular GPI is also known to function as a maturation factor.

Neuroleukin Though originally treated as separate proteins, cloning technology demonstrated that GPI is almost identical to the protein neuroleukin. Neuroleukin is a neurotrophic factor for spinal and sensory neurons. It is found in large amounts in muscle, brain, heart, and kidneys. Neuroleukin also acts as a lymphokine secreted by T cells stimulated by lectin. It induces immunoglobulin secretion in B cells as part of a response that activates antibody-secreting cells.

Autocrine motility factor Cloning experiments also revealed that GPI is identical to the protein known as autocrine motility factor (AMF). AMF produced and secreted by cancer cells and stimulates cell growth and motility as a growth factor. AMF is thought to play a key role in cancer metastasis by activating the MAPK/ERK or PI3K/AKT pathways. In the PI3K/AKT pathway, AMF interacts with gp78/AMFR to regulate ER calcium release, and therefore protect against apoptosis in response to ER stress.

Prokaryotic orthologs In some archaea and bacteria glucose-6-phosphate isomerase activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic GPIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional GPI. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerization for the interconversion of G6P to F6P.

… excerpt ends here. Continue reading the full article.

Illustrations

Glucose-6-phosphate isomerase illustration
Glucose-6-phosphate isomerase illustration
Glucose-6-phosphate isomerase illustration
Glucose-6-phosphate isomerase illustration
Glucose-6-phosphate isomerase illustration

Worked examples

Example 1 — a first encounter with Glucose-6-phosphate isomerase

Start with the simplest possible case. Write down what Glucose-6-phosphate isomerase claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Glucose-6-phosphate isomerase before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Glucose-6-phosphate isomerase ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Glucose-6-phosphate isomerase

In research
Glucose-6-phosphate isomerase appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Glucose-6-phosphate isomerase in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Glucose-6-phosphate isomerase is common in secondary-school and first-year university syllabi. It links to neighbouring topics EC 5.3.1, Genes on human chromosome 19, Glycolysis, so understanding it makes those chapters shorter.
In everyday life
Look for Glucose-6-phosphate isomerase outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Glucose-6-phosphate isomerase in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Glucose-6-phosphate isomerase means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Glucose-6-phosphate isomerase out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Glucose-6-phosphate isomerase in simple terms?

Glucose-6-phosphate isomerase (GPI), alternatively known as phosphoglucose isomerase/phosphoglucoisomerase (PGI) or phosphohexose isomerase (PHI), is an enzyme ( EC 5.3.1.9) that in humans is encoded by the GPI gene on chromosome 19. This gene encodes a member of the glucose phosphate isomerase pro…

Why does Glucose-6-phosphate isomerase matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Glucose-6-phosphate isomerase?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Glucose-6-phosphate isomerase.

Tags

  • EC 5.3.1
  • Genes on human chromosome 19
  • Glycolysis
  • Glycolysis enzymes
  • Protein domains
  • Tumor markers

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