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Hydrophobic mismatch

Hydrophobic mismatch is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Hydrophobic mismatch rather than just read about it. In short: Hydrophobic mismatch is the difference between the thicknesses of hydrophobic regions of a transmembrane protein and of the biological membrane it spans. In order to avoid unfavorable exposure of hydrophobic surfaces to water, the hydrophobic regions of transmembrane proteins are expected to have approximately the same thickness as the hydrophobic (lipid acyl chain) region of the surrounding lipid bilayer.

Hydrophobic mismatch — main illustration
Hydrophobic mismatch — illustration

Key takeaways

  • Hydrophobic mismatch belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Hydrophobic mismatch to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Hydrophobic mismatch from memory before moving on to harder problems.

Reference excerpt

Hydrophobic mismatch is the difference between the thicknesses of hydrophobic regions of a transmembrane protein and of the biological membrane it spans. In order to avoid unfavorable exposure of hydrophobic surfaces to water, the hydrophobic regions of transmembrane proteins are expected to have approximately the same thickness as the hydrophobic (lipid acyl chain) region of the surrounding lipid bilayer. Nevertheless, the same membrane protein can be encountered in bilayers of different thickness. In eukaryotic cells, the plasma membrane is thicker than the membranes of the endoplasmic reticulum. Yet all proteins that are abundant in the plasma membrane are initially integrated into the endoplasmic reticulum upon synthesis on ribosomes. Transmembrane peptides or proteins and surrounding lipids can adapt to the hydrophobic mismatch by different means.

Possible adaptations to mismatch

In order to avoid unfavorable exposure of hydrophobic surfaces to a hydrophilic environment, biological membrane tends to adapt to such mismatch. For example, an integral membrane protein tends to surround itself by lipids of matching size and shape due to protein and lipid segregation. Since proteins are relatively rigid, whereas lipid hydrocarbon chains are flexible, the condition of hydrophobic matching can be fulfilled by stretching, squashing, and/or tilting of the lipid chains

When the hydrophobic part of a transmembrane protein is too thick to match the hydrophobic bilayer thickness (left part of Figure), the protein can aggregate in the membrane to minimize the exposed hydrophobic area or tilt to reduce their effective hydrophobic thickness. They can also adopt by changing the orientation of hydrophobic and hydrophilic side chains near the interface. Lipids in turn can modulate the membrane thickness by stretching their acyl chains. When the hydrophobic part of a transmembrane protein is too thin to match the hydrophobic bilayer thickness (right part of Figure), again this might result in protein aggregation, or changes in backbone conformation and/or side chain orientation. Too short peptides may adopt a surface localization. Lipids could decrease the local bilayer thickness by disordering their acyl chains.

Protein aggregation Since Mouritsen and Bloom proposed the detailed thermodynamic model, which includes adaptation of the lipids and induction of protein segregation at a more extreme mismatch in their “Mattress Model”, more additional insight into mismatch-induced protein aggregation has been obtained. Also some experimental evidence that a hydrophobic mismatch can lead to protein aggregation in fluid bilayer were founded. Electron microscopy studies on bacteriorhodopsin, reconstituted in saturated and unsaturated fluid PC bilayers with varying chain length, showed that protein aggregation occurred only with a rather large mismatch, and that bilayer thicknesses of 4 angstrom thicker and 10 angstrom thinner than the estimated hydrophobic thickness of the protein are allowed without induction of significant aggregation.

Helix tilt Tilt is also a possible result if the hydrophobic part of a peptide or protein is too long to span the membrane. A previous study on lactose permease of E. coli showed that upon reconstitution of the protein in PE/PG (3/1) lipid bilayer, an increase in helix tilt occurs at increasing protein content. This tilt was accompanied by a decrease in lipid order, which results in a decrease in bilayer thickness, suggesting that it is a mismatch related response. In large proteins that span the membrane multiple times, changes in helical tilt may occur with little effect on lipid packing. However, for a single transmembrane helix, it is possible that a tilt would cause a strain on the surrounding lipids to accommodate the helix in the bilayer. Thus, a large degree of tilting can be a less favorable option for single transmembrane proteins.

Surface orientation Relatively small hydrophobic peptides may not be able to integrate into the membrane, and in response adopt an orientation at the membrane surface. The experimental evidence was shown by a fluorescence study on an artificial peptide with a 19 amino acid long hydrophobic sequence of mainly leucines and flanked on both sides with lysines as anchoring residues. The results indicated that a conversion from a dominant transmembrane to parallel orientation of the peptide could be induced by modulating bilayer thickness via addition of cholesterol or by increasing lipid chain length.

Backbone conformation change To obtain detailed information on the consequences of mismatch for the conformation of peptides and proteins in lipid bilayer, small membrane-spanning peptides are most suitable. Still need some studies.

Theories for the mismatch effects Different theoretical approaches have been applied to describe the energy cost and thermodynamic effects of mismatch, including treatment of the membrane as an elastic sheet or a microscopic approach.

Mattress model

Mattress model was proposed as a phenomenological theory approach in 1984 by Mouritsen and Bloom. It is a two-component real solution theory based on the theory of nonideal solutions and hence allows for phase separation. In their model, they relate the energy stored in the undulations of the membrane surface caused by the mismatch to the elastic properties of the lipids and proteins. They do not include microscopic detail of the lipids, but use as input the known thermodynamic properties of the pure lipid system. They also include indirect lipid-protein interactions induced by the mismatch as well as direct lipid-protein van der Waals-like interactions between the hydrophobic parts of the lipid bilayer and the proteins. The excess "hydrophobic effect" associated with the lipid-protein hydrophobic mismatch, and the elastic deformation free energy of the lipid chains near the protein. The interaction potentials are estimated based on experimental data derived from thermodynamic and mechanical measurements of membrane properties.

Monte Carlo simulation scheme The mattress model was later replicated in a Monte Carlo simulation scheme by Sperotto and Mouritsen. They allowed for different microstates of the lipids, classified according to Pink’s 10-state model. hence enabling a pure lipid bilayer phase transition. This version of the model provides a connection between the microscopic characteristics of the system and its thermodynamic behavior.

… excerpt ends here. Continue reading the full article.

Illustrations

Hydrophobic mismatch: Mattress model
Mattress model

Worked examples

Example 1 — a first encounter with Hydrophobic mismatch

Start with the simplest possible case. Write down what Hydrophobic mismatch claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Hydrophobic mismatch before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Hydrophobic mismatch ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Hydrophobic mismatch

In research
Hydrophobic mismatch appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Hydrophobic mismatch in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Hydrophobic mismatch is common in secondary-school and first-year university syllabi. It links to neighbouring topics Membrane biology, so understanding it makes those chapters shorter.
In everyday life
Look for Hydrophobic mismatch outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Hydrophobic mismatch in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Hydrophobic mismatch means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Hydrophobic mismatch out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Hydrophobic mismatch in simple terms?

Hydrophobic mismatch is the difference between the thicknesses of hydrophobic regions of a transmembrane protein and of the biological membrane it spans. In order to avoid unfavorable exposure of hydrophobic surfaces to water, the hydrophobic regions of transmembrane proteins are expected to have a…

Why does Hydrophobic mismatch matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Hydrophobic mismatch?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Hydrophobic mismatch.

Tags

  • Membrane biology

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