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Lattice light-sheet microscopy

Lattice light-sheet microscopy is a physics topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Lattice light-sheet microscopy rather than just read about it. In short: Lattice light-sheet microscopy is a modified version of light sheet fluorescence microscopy that increases image acquisition speed while decreasing damage to cells caused by phototoxicity. This is achieved by using a structured light sheet to excite fluorescence in successive planes of a specimen, generating a time series of 3D images which can provide information about dynamic biological processes.

Lattice light-sheet microscopy — main illustration
Lattice light-sheet microscopy — illustration

Key takeaways

  • Lattice light-sheet microscopy belongs to physics; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Lattice light-sheet microscopy to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Lattice light-sheet microscopy from memory before moving on to harder problems.

Reference excerpt

Lattice light-sheet microscopy is a modified version of light sheet fluorescence microscopy that increases image acquisition speed while decreasing damage to cells caused by phototoxicity. This is achieved by using a structured light sheet to excite fluorescence in successive planes of a specimen, generating a time series of 3D images which can provide information about dynamic biological processes. It was developed in the early 2010s by a team led by Eric Betzig. According to an interview conducted by The Washington Post, Betzig believes that this development will have a greater impact than the work that earned him the 2014 Nobel Prize in Chemistry for "the development of super-resolution fluorescence microscopy".

Setup of Lattice Light-sheet Fluorescence Microscopy

Lattice light sheet microscopy is a novel combination of techniques from Light sheet fluorescence microscopy, Bessel beam microscopy, and Super-resolution microscopy (specifically structured illumination microscopy, SIM). In lattice light sheet microscopy, very similarly to light sheet microscopy, the illumination of the sample occurs perpendicular to the image detection. Initially the light sheet is formed by stretching the linearly polarized circular input beam with a pair of cylindrical lenses along the x axis and then compressing it with an additional pair of lenses along the z axis. This modification creates a thin sheet of light that is then projected onto a binary ferroelectric spatial light modulator (SLM). The SLM is a device that spatially varies the waveform of a beam of light. The light that is reflected back from the SLM is used to eliminate unwanted diffraction. Diffraction is eliminated by the transform lens that creates a Fraunhofer diffraction pattern from the reflected light at an opaque mask containing a transparent annulus. Optical lattices are two or three dimensional interference patterns, which here are produced by the transparent annular ring. The mask is conjugate to x and z galvanometers. This quality of the microscope is important for the dithered mode of operation, where the light sheet must be oscillated within the x axis. The lattice light-sheet microscope has two modes of operation: In the dithered mode, the light sheet is rapidly scanned along the x axis and only one image is recorded per Z plane, at normal diffraction limited resolutions. The second mode of operation is the structured illumination microscopy mode (SIM). SIM is a technique where a grid pattern of excitation light is superimposed on the sample and rotated in steps between the capture of each image. These images are then processed via an algorithm to produce a reconstructed image past the limit of diffraction that is built into our optical instruments.

Theory

Lattice light sheet microscopy can be viewed as an improvement of Bessel beam light sheet microscopes in terms of axial resolution (also termed resolution in z). In Bessel beam light sheet microscopes, a non-diffracting Bessel beam is first created then dithered in the x direction to produce a sheet. However, the lobes of a Bessel functions carry as much energy as the central spot, resulting in illumination out of the depth of field of the observation objective. Lattice light sheet microscopy aims at reducing the intensity of the outer lobes of the Bessel functions by destructive interference. To do so, a two-dimensional lattice of regularly spaced Bessel beams is created. Then, destructive interference can be triggered by carefully tuning the spacing between the beams (that is, the period of the lattice). Practically, the lattice of interfering Bessel beams is engineered by a spatial light modulator (SLM), a liquid-crystal device whose individual pixels can be switched on and off to display a binary pattern. Due to the matrix nature of the SLM, the generated pattern contains many unwanted frequencies. Thus, these are filtered out by the means of an annulus placed in a plane conjugated with the back focal plane of the objective (Fourier domain). Finally, to obtain a uniform intensity at the sample rather than a lattice, the sheet is dithered using a galvanometer oscillating in the x direction.

Improvements On Other Methods Lattice Light-Sheet Microscopy combines high resolution and clarity at high image acquisition speed, without damaging samples through photobleaching. Photobleaching is a major and highly common problem in fluorescence microscopy wherein fluorescent tags will lose their ability to emit photons upon repeated excitation. Unlike common fluorescence microscopes, samples in a Lattice Light-Sheet Microscope experience photobleaching at a rate drastically reduced when compared to conventional techniques (In conventional techniques, this results in an image signal that gets weaker over the course of multiple excitations). This allows for longer exposures without loss of signal, which in turn allows for video to be captured at over longer periods of time. The Lattice method also has the ability to resolve 200 to 1000 planes per second, an extremely fast imaging rate that allows continuous video capture. This capture rate is one order of magnitude faster than Bessel beam excitation, and two orders of magnitude faster than Spinning Disk Confocal Microscopy. These two advantages combine to allow researchers to take very detailed movies over long periods of time.

Limitations Lattice light sheet microscopy is limited to transparent and thin samples to achieve good image quality. The quality of image acquired degrades with imaging depth. This phenomenon occurs due to sample-induced aberrations, and it has been proposed that imaging samples to beyond 20 to 100 μm will require adaptive optics.

Resolution SIM: 150 nm by 230 nm xy resolution, 280 nm z resolution Dithered: 230 nm by 230 nm xy resolution, ~370 nm z resolution

Contrast Because the excitation band is ~1.0 micron in width, and the focal depth of the detection objective is ~1.1 microns deep, the majority of illuminated molecules are in the focal plane.

Depth into sample Imaging beyond 20–100 microns in depth is theorized to be possible through combining lattice light-sheet technology with adaptive optics.

… excerpt ends here. Continue reading the full article.

Illustrations

Lattice light-sheet microscopy: Lattice of destructively interfering Bessel beams.
(a). schematic of destructive (top) and constructive (bottom) interference patterns between two Bessel beams. Note how the rings between the two centers get attenuated/amplified.

(b). interference pattern on a 2D optical lattice created by the interference of Bessel beams. inset: one Bessel function before interference,

(c)-left: SLM-mediated selection of a subpattern of the lattice, red: SLM pixels off, -right: view of the incident beam at sample (after dithering the beam in the x direction),

(d). Bessel function (left) and its intensity in the Fourier domain (right), and a zoom on the annulus (inset),
(e). intensity at the Fourier plane of an array of Bessel beams (left) and its intensity at the object plane (right).
Lattice of destructively interfering Bessel beams. (a). schematic of destructive (top) and constructive (bottom) interference patterns between two Bessel beams. Note how the rings between the two centers get attenuated/amplified. (b). interference pattern on a 2D optical lattice created by the interference of Bessel beams. inset: one Bessel function before interference, (c)-left: SLM-mediated selection of a subpattern of the lattice, red: SLM pixels off, -right: view of the incident beam at sample (after dithering the beam in the x direction), (d). Bessel function (left) and its intensity in the Fourier domain (right), and a zoom on the annulus (inset), (e). intensity at the Fourier plane of an array of Bessel beams (left) and its intensity at the object plane (right).

Worked examples

Example 1 — a first encounter with Lattice light-sheet microscopy

Start with the simplest possible case. Write down what Lattice light-sheet microscopy claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In physics, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Lattice light-sheet microscopy before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Lattice light-sheet microscopy ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Lattice light-sheet microscopy

In research
Lattice light-sheet microscopy appears in physics research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Lattice light-sheet microscopy in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Lattice light-sheet microscopy is common in secondary-school and first-year university syllabi. It links to neighbouring topics Cell imaging, Fluorescence techniques, Microscopy, so understanding it makes those chapters shorter.
In everyday life
Look for Lattice light-sheet microscopy outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Lattice light-sheet microscopy in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Lattice light-sheet microscopy means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Lattice light-sheet microscopy out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Lattice light-sheet microscopy in simple terms?

Lattice light-sheet microscopy is a modified version of light sheet fluorescence microscopy that increases image acquisition speed while decreasing damage to cells caused by phototoxicity. This is achieved by using a structured light sheet to excite fluorescence in successive planes of a specimen…

Why does Lattice light-sheet microscopy matter?

Because it connects several physics ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Lattice light-sheet microscopy?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Lattice light-sheet microscopy.

Tags

  • Cell imaging
  • Fluorescence techniques
  • Microscopy
  • Optical microscopy

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