The list of bioinformatics software tools can be split up according to the license used:
List of proprietary bioinformatics software List of open-source bioinformatics software Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on:
Sequence analysis software List of sequence alignment software List of alignment visualization software Alignment-free sequence analysis De novo sequence assemblers List of gene prediction software List of disorder prediction software List of Protein subcellular localization prediction tools List of phylogenetics software List of phylogenetic tree visualization software
Structural biology software List of molecular graphics systems List of protein-ligand docking software List of RNA structure prediction software List of software for protein model error verification List of systems biology modeling software List of protein secondary structure prediction programs List of protein structure prediction software Structural alignment software
Other Compression of genomic sequencing data Bioinformatics workflow management system List of biomedical cybernetics software List of genetic engineering software List of systems biology visualization software List of systems biology modelling software List of mass spectrometry software
See also Category:Molecular dynamics software Category:Metagenomics_software