Methane clumped isotopes are methane molecules that contain two or more rare isotopes. Methane (CH4) contains two elements, carbon and hydrogen, each of which has two stable isotopes. For carbon, 98.9% are in the form of carbon-12 (12C) and 1.1% are carbon-13 (13C); while for hydrogen, 99.99% are in the form of protium (1H) and 0.01% are deuterium (2H or D). Carbon-13 (13C) and deuterium (2H or D) are rare isotopes in methane molecules. The abundance of the clumped isotopes provides information independent from the traditional carbon or hydrogen isotope composition of methane molecules.
Introduction Isotopologues are molecules that have the same chemical composition, but differ only in their isotopic composition. Methane has ten stable isotopologues: 12CH4, 13CH4, 12CH3D, 13CH3D, 12CH2D2, 13CH2D2, 12CHD3, 13CHD3, 12CD4 and 13CD4, among which, 12CH4 is an unsubstituted isotopologue; 13CH4 and 12CH3D are singly substituted isotopologues; 13CH3D and 12CH2D2 are doubly substituted isotopologues. The multiple-substituted isotopologues are clumped isotopologues. The absolute abundance of each isotopologue primarily depends on the traditional carbon and hydrogen isotope compositions (δ13C and δD) of the molecules. Clumped isotope composition is calculated relative to the random distribution of carbon and hydrogen isotopes in the methane molecules. The deviations from the random distribution is the key signature of methane clumped isotope (please see "notation" for details). In thermodynamic equilibrium, methane clumped isotopologue composition has a monotonic relationship with formation temperature. This is the condition for many geological environments so that methane clumped isotope can record its formation temperature, and therefore can be used to identify the origins of methane. When methane clumped-isotope composition is controlled by kinetic effects, for example, for microbial methane, it has the potential to be used to study metabolism. The study of methane clumped isotopologues is very recent. The first mass spectrometry measurement of methane clumped isotopologues of natural abundance was made in 2014. This is a very young and fast-growing field.
Assuming isotopes are randomly distributed throughout all isotopologues and isotopes are of natural abundance.
Notation
Δ notation The Δ notation of clumped isotopes is an analogue to δ notation of traditional isotopes (e.g. δ13C, δ18O, δ15N, δ34S and δD). The notation of traditional isotopes are defined as:
δ = ( ( R s a m p l e R r e f e r e n c e ) − 1 ) × 1000 {\displaystyle \delta =(\left({\frac {R_{sample}}{R_{reference}}}\right)-1)\times 1000} ‰
R s a m p l e {\displaystyle R_{sample}} is the ratio of the rare isotope to the abundant isotope in the sample. R r e f e r e n c e {\displaystyle R_{reference}} is the same ratio in the reference material. Because the variation of R s a m p l e {\displaystyle R_{sample}} is rather small, in the convenience of comparison between difference samples, the notation is define as a ratio minus 1 and expressed in permil (‰). The Δ notation is inherited from traditional δ notation. But the reference is not a physical reference material. Instead, the reference frame is defined as the stochastic distribution of isotopologues in the sample. It means the values of Δ are to denote the excess or deficit of the isotopologue relative to the amount expected if a material conforms to the stochastic distribution. The calculation of stochastic distribution of methane isotopologues:
13 C H 3 D R ∗ = 4 × 2 R × 13 R {\displaystyle ^{^{13}CH_{3}D}R^{*}=4\times {^{2}R}\times {^{13}R}}
12 C H 2 D 2 R ∗ = 6 × 2 R 2 {\displaystyle ^{^{12}CH_{2}D_{2}}R^{*}=6\times {^{2}R}^{2}}
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