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Notexin

Notexin is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Notexin rather than just read about it. In short: Notexin is a toxin produced by the tiger snake (Notechis scutatus). It is a myotoxic and presynaptic, neurotoxic phospholipase A2 (PLA2s).

Notexin — main illustration
Notexin — illustration

Key takeaways

  • Notexin belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Notexin to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Notexin from memory before moving on to harder problems.

Reference excerpt

Notexin is a toxin produced by the tiger snake (Notechis scutatus). It is a myotoxic and presynaptic, neurotoxic phospholipase A2 (PLA2s). These are enzymes that hydrolyze the bond between a fatty acid tail and glycerol in fatty acids on the 2-position.

History The name notexin comes from the fact that this toxin was first found to be the major component in the venom of the tiger snake. The name notexin is thus a combination of the genus name Notechis and the word toxin. The tiger snake was first described by Wilhelm Peters in 1861. The toxin was first purified more than a hundred years later in 1972 by Karlsson et al. This prompted more research into notexin.

Structure Notexin consists of a single molecule. This molecule is a single-peptide chain of 119 amino acid residues that are cross-linked with 7 disulfide-bridges. X-ray diffraction has been used to determine the crystal structure of notexin and led to the conclusion that notexin belongs to either the P3121 or P3221 space group with lattice parameters a = b = 74.6 Å, c = 49.0 Å with a β of 120⁰. This data was found with a resolution of 2.0 Å and had an R-factor of 16.5%. For protein data, this R-factor is usually 20%, indicating that the crystal structure of notexin is relatively well defined. The supramolecular structure of notexin is very similar to that of other PLA2s. Both notexin and many PLA2s contain four characteristic main helices (the αA, αB, αC and αE helices) and a short carboxyl end helix in their secondary structure. Also the active site seems to be similar enough to that of other PLA2s in order to use their model building studies when discussing enzymatic properties. Notexin does deviate significantly from other PLA2s due to different main chain lengths and its conformation in the 69th amino acid residue. The active site of notexin contains His-48. This residue is in close contact with the carboxylate oxygens of an Asp-99 residue, which is also present in notexin. For most PLA2s the wall of the active site is covered with hydrophobic residues. When a lone pair on the oxygen of water attacks the ester, the His-48 residue facilitates a proton transfer and the substrates's carbonyl oxygen is possibly fixated and stabilized by the positively charged NH-groups on the PLA2s.

Mechanism of action Notexin is generally lethal if it enters the bloodstream in rats. This lethal effect is the result of a presynaptic blockade of transmission across neuromuscular junctions of the breathing muscles, causing asphyxiation. It has also been shown to have myotoxic effects upon intravenous injection. Myotoxic effects generally entail muscle necrosis. It was proposed (Dixon et al., 1996) that this myotoxicity of notexin is the result of notexin binding to the sarcolemma, causing hypercontraction and thereby muscle necrosis as a result of the membrane between places of hypercontraction rupturing. The presynaptic activity is, however, much more potent, at least in mice. Notexin causes an indirect reduction or complete end of the release of acetylcholine in the affected nerve terminals. This acetylcholine normally causes an action potential and thereby muscle contraction. It was found that this reduction of acetylcholine release was caused by an impaired recycling of synaptic vesicles as a reduction in the content of synaptic vesicles and abnormally large vesicles were observed in the affected tissues. This was followed by shrinking of the nerve terminals and the amount of vesicles in these terminals decreasing. The exact way of interaction with the cell is unknown, but it is suggested that notexin, like other PLA2s, interacts with high-affinity specific protein receptors or low-affinity lipid domains of muscle cells and motor neurons. Interaction of notexin with the plasma membrane results in the hydrolysis of the phospholipids in the cell membrane. A study showed that without the PLA2 activity, notexin also has membrane damaging effects, suggesting that notexin has multiple mechanisms to damage the cell membrane. Cell membranes become permeable for ions and cause an influx of Ca2+ from the extracellular medium. In muscle cells the influx of Ca2+ causes hypercontraction of myofilaments, which can cause mechanical damage to the plasma membrane. The mitochondria will take up Ca2+, eventually leading to a reduced mitochondrial functionality. The high Ca2+ concentration in the cytosol activates Ca2+-dependent proteinases, calpains, and the endogenous Ca2+-dependent phospholipase A2. The calpains degrade the cytoskeletal components of the cell and Ca2+-dependent phospholipase A2 hydrolyses the cell membrane, which leads to further cell degradation and bigger influx of Ca2+. At a certain point the damage is irreversible and necrosis of the cell occurs. In neurons the influx of calcium causes the release of the ready-to-release synaptic vesicles and the reserve pool of synaptic vesicles. Research showed that neurons, after treatment with notexin, had strongly reduced numbers of synaptic vesicles. These results seem to indicate that notexin inhibits the endocytosis of new synaptic vesicles, besides the exocytosis as a result of the Ca2+ influx. Like in muscle cells, the Ca2+ influx in neurons also leads to reduced mitochondrial functionality and the activation of calpains and endogenous Ca2+-dependent PLA2s. This leads to the same structural damage as in muscle cells. Experimental research also showed that notexin had nephrotoxic effects on mice. A study showed that depending on the dose, there was renal tubular and glomerular damage within 24 hours.

… excerpt ends here. Continue reading the full article.

Illustrations

Notexin illustration

Worked examples

Example 1 — a first encounter with Notexin

Start with the simplest possible case. Write down what Notexin claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Notexin before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Notexin ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Notexin

In research
Notexin appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Notexin in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Notexin is common in secondary-school and first-year university syllabi. It links to neighbouring topics Acetylcholine release inhibitors, Neurotoxins, Snake toxins, so understanding it makes those chapters shorter.
In everyday life
Look for Notexin outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.

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How to study Notexin in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Notexin means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Notexin out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Notexin in simple terms?

Notexin is a toxin produced by the tiger snake (Notechis scutatus). It is a myotoxic and presynaptic, neurotoxic phospholipase A2 (PLA2s).

Why does Notexin matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Notexin?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Notexin.

Tags

  • Acetylcholine release inhibitors
  • Neurotoxins
  • Snake toxins

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