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Pan-assay interference compounds

Pan-assay interference compounds is a chemistry topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Pan-assay interference compounds rather than just read about it. In short: Pan-assay interference compounds (PAINS) are chemical compounds that often give false positive results in high-throughput screens. PAINS tend to react nonspecifically with numerous biological targets rather than specifically affecting one desired target.

Pan-assay interference compounds — main illustration
Pan-assay interference compounds — illustration

Key takeaways

  • Pan-assay interference compounds belongs to chemistry; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Pan-assay interference compounds to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Pan-assay interference compounds from memory before moving on to harder problems.

Reference excerpt

Pan-assay interference compounds (PAINS) are chemical compounds that often give false positive results in high-throughput screens. PAINS tend to react nonspecifically with numerous biological targets rather than specifically affecting one desired target. A number of disruptive functional groups are shared by many PAINS. While a number of filters have been proposed and are used in virtual screening and computer-aided drug design, the accuracy of filters with regard to compounds they flag and don't flag has been criticized. Common PAINS include toxoflavin, isothiazolones, hydroxyphenyl hydrazones, curcumin, phenol-sulfonamides, rhodanines, enones, quinones, and catechols such as luteolin, baicalin and scutellarin.

See also Drug discovery

References

Further reading Yang JJ, Ursu O, Lipinski CA, Sklar LA, Oprea TI, Bologa CG (2016). "Badapple: promiscuity patterns from noisy evidence". Journal of Cheminformatics. 8: 29. doi:10.1186/s13321-016-0137-3. PMC 4884375. PMID 27239230. Ringer JA, Lambert CG, Bradfute SB, Bologa CG, Yang JJ (2025). "Badapple 2.0: An Empirical Predictor of Compound Promiscuity, Updated, Modernized, and Enhanced for Explainability". Journal of Chemical Information and Modeling. doi:10.1021/acs.jcim.5c02297. PMID 41235766. Badapple databases

Worked examples

Example 1 — a first encounter with Pan-assay interference compounds

Start with the simplest possible case. Write down what Pan-assay interference compounds claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In chemistry, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Pan-assay interference compounds before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Pan-assay interference compounds ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Pan-assay interference compounds

In research
Pan-assay interference compounds appears in chemistry research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Pan-assay interference compounds in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Pan-assay interference compounds is common in secondary-school and first-year university syllabi. It links to neighbouring topics Medicinal chemistry, Pharmacology stubs, so understanding it makes those chapters shorter.
In everyday life
Look for Pan-assay interference compounds outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Pan-assay interference compounds in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Pan-assay interference compounds means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Pan-assay interference compounds out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Pan-assay interference compounds in simple terms?

Pan-assay interference compounds (PAINS) are chemical compounds that often give false positive results in high-throughput screens. PAINS tend to react nonspecifically with numerous biological targets rather than specifically affecting one desired target.

Why does Pan-assay interference compounds matter?

Because it connects several chemistry ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Pan-assay interference compounds?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Pan-assay interference compounds.

Tags

  • Medicinal chemistry
  • Pharmacology stubs

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