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Paraoxonase

Paraoxonase is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Paraoxonase rather than just read about it. In short: Paraoxonases are a family of mammalian enzymes with aryldialkylphosphatase activity. There are three paraoxonase isozymes, which were originally discovered for their involvement in the hydrolysis of organophosphates.

Paraoxonase — main illustration
Paraoxonase — illustration

Key takeaways

  • Paraoxonase belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Paraoxonase to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Paraoxonase from memory before moving on to harder problems.

Reference excerpt

Paraoxonases are a family of mammalian enzymes with aryldialkylphosphatase activity. There are three paraoxonase isozymes, which were originally discovered for their involvement in the hydrolysis of organophosphates. Research has indicated the enzymatic activity of paraoxonases is more diversified than its activity as an organophosphatase. Esterase and lactonase activity has also been observed from these enzymes and although the physiologically relevant substrates for these enzymes are unknown, it is likely that lactones are the main substrate (although there is a relatively high level of variation in substrate specificity among these enzymes). Most of the studies on the paraoxonase family have specifically looked at the paraoxonase 1 type, leaving much to be learned about the remaining two. The study of this enzyme family has many potential consequences in preventative medicine and toxicology as well as in certain societal contexts. The genes that encode for these enzymes have a number of different polymorphisms, which created additional interest in the study of this enzyme group and its potential ethnic variations. Additional research on the inhibition and selective inhibition, specifically of PON1, has been done to shed some light on the connections between decreases in enzymatic activity of individuals with cardiovascular diseases. Evidence also suggests that this family of enzymes has some role in our innate immune system.

Types There are three known paraoxonases, which are encoded by the genes PON1, PON2 and PON3, located on the long arm of chromosome 7 in humans. The differences between them lie in their locations and activities.

Paraoxonase 1 has gene expression primarily in the liver but has also been expressed in tissue from the kidney and parts of the colon. Paraoxonase 1 that is synthesized in the liver is then transported into the bloodstream, where it will associate with high-density lipoprotein (HDL). It has been shown to have broad substrate specificity and has proved to protect against exposure to some organophosphates (such as those from insecticides) by hydrolyzing potentially toxic metabolites. Paraoxonase 1 also plays an important role as an antioxidant in preventing the oxidation of low-density lipoproteins (LDL), a process that is directly involved in the development of atherosclerosis. Its serum concentration is influenced by inflammatory changes and the levels of serum oxidised-LDL. Paraoxonase 2 is a ubiquitously expressed intracellular protein that can protect cells against oxidative damage. While paraoxonase 2 shares similar antioxidant properties with its two enzyme counterparts, it lacks the ability to hydrolyze some of the organophosphate metabolites. Paraoxonase 3 is similar to type 1 in activity but differs from it in substrate specificity. Serum PON3 activity is one hundredth that of PON1. Additionally, it is not regulated by inflammation and levels of oxidised lipids. Both paraoxonase 1 and 3 are bound to HDL and because of their similar properties as antioxidants, it is possible PON3 also plays a role in the prevention of LDL and HDL oxidation.

Biological function Paraoxonases have been found to perform a number of biological functions, although the primary role of this group of enzymes is still a topic of speculation. Some of the observed roles have revealed activities of anti-inflammatory, anti-oxidative, anti-atherogenic, anti-diabetic, anti-microbial and organophosphate-hydrolyzing properties. Two of the most important known roles that Paraoxonases plays are in functioning as a lactonase and an arylesterase. These properties provide a promising potential for development of new therapeutic interventions to combat a number of health conditions.

Mechanism

The study of this family of enzymes has been something of interest for a number of years now; however, the lack of identifying specific natural substrates and numerous physiological roles has made it difficult in determining mechanisms of action for the diverse number of reactions catalyzed by this enzyme family. One of the more studied mechanisms is the lactonase mechanism of Serum Paraoxonase-1. One of the proposed mechanism outlines the hydrolysis of 5-membered ring lactone substrates by serum Paraoxonase-1. PON1, as with PON2 and PON3, utilizes a catalytic calcium ion, which functions as an oxy-anion to stabilize substrate and reaction states. Additionally, this enzyme active site employs two histidine residues (His115 and 134) involved in proton transfers, a glutamic acid (Glu53) to stabilize reactive hydrogens, and an asparagine (Asn168) to stabilize transition states and intermediates in the active site. The exact mechanism is still a subject of further research and it is suggested that the His115 residue is not necessary for the lactonase and arylesterase activity of the enzyme.

Regulation One of the common inhibitors of enzymatic activity (for PON 1 and PON 3) is lipid peroxides found in the plasma. Lipid peroxides can inhibit Paraoxonase activity as an arylesterase and antioxidant, although the specific inhibition is dependent on the type of lipid head group. An important implication of this fact is that, in decreasing the activity of PON1 and PON3, the productivity of preventing oxidation of LDL. Enzyme activity is also regulated by a substrate-dependent polymorphism that occurs at position 192. There are two known isoforms, one having an arginine residue at the 192 position and the other a glutamine, which are associated with high and low enzymatic activity respectively.

Clinical significance The development of atherosclerosis is a complex process, although the main underlying feature is simply an increase in low-density lipoprotein (LDL) oxidation. PON1 and PON3 prevent the formation of atherogenic oxidised-LDL, the form of LDL present in foam cells of an atheromatous plaque. Because of their know association with high-density lipoprotein (HDL) and their effect on oxidized-LDL, PON1 and PON3 are implicated in lowering the risk of developing coronary artery disease and atherosclerosis.

… excerpt ends here. Continue reading the full article.

Illustrations

Paraoxonase: A 360 degree view of Serum Paraoxonase-1 (1v04)
A 360 degree view of Serum Paraoxonase-1 (1v04)
Paraoxonase: One of the proposed lactonase active sites for serum paraoxonase-1 identifying relevant  residues as well as the catalytic calcium ion. No substrate was used in this crystallized structure.
One of the proposed lactonase active sites for serum paraoxonase-1 identifying relevant residues as well as the catalytic calcium ion. No substrate was used in this crystallized structure.

Worked examples

Example 1 — a first encounter with Paraoxonase

Start with the simplest possible case. Write down what Paraoxonase claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Paraoxonase before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Paraoxonase ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Paraoxonase

In research
Paraoxonase appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Paraoxonase in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Paraoxonase is common in secondary-school and first-year university syllabi. It links to neighbouring topics EC 3.1, Genes on human chromosome 7, Protein families, so understanding it makes those chapters shorter.
In everyday life
Look for Paraoxonase outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Paraoxonase in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Paraoxonase means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Paraoxonase out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Paraoxonase in simple terms?

Paraoxonases are a family of mammalian enzymes with aryldialkylphosphatase activity. There are three paraoxonase isozymes, which were originally discovered for their involvement in the hydrolysis of organophosphates.

Why does Paraoxonase matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Paraoxonase?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Paraoxonase.

Tags

  • EC 3.1
  • Genes on human chromosome 7
  • Protein families

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