Picornain 3C (EC 3.4.22.28) is a protease found in picornaviruses, which cleaves peptide bonds of non-terminal sequences. Picornain 3C’s endopeptidase activity is primarily responsible for the catalytic process of selectively cleaving Gln-Gly bonds in the polyprotein of poliovirus and with substitution of Glu for Gln, and Ser or Thr for Gly in other picornaviruses. Picornain 3C are cysteine proteases related by amino acid sequence to trypsin-like serine proteases. Picornain 3C is encoded by enteroviruses, rhinoviruses, aphtoviruses and cardioviruses. These genera of picoviruses cause a wide range of infections in humans and mammals. Picornavirus belongs to the family Picornaviridae. Picornavirus virions are nonenveloped and the +ssRNA nonsegmented genome is encapsulated in an icosahedral protein structure made from four capsid proteins encoded by the virus. Picornavirus viral replication typically takes place in the cytoplasm of the cell. Picornavirus +ssRNA genome then gets translated via internal ribosome entry sites (IRES) that is recognized by host cell ribosomes for cap independent translation. To compete with other mRNA transcripts, picornavirus destroys cap dependent translation in the host so host cell ribosomes will favor translation of viral transcripts. +ssRNA makes –ssRNA intermediates to make more viral +ssRNA. The genome of picornavirus is exhibited in Figure 1. As displayed, picornavirus does not have a viral 5’ cap but instead encodes for a protein Vpg. The absence of the 5’ cap is why the picornavirus genome depends on cap dependent translation for replication. The genome, however, does contain a poly-A tail on the opposite end of the Vpg protein. Both ends of the genome has UTR (untranslated regions). The picornavirus genome has three proteins (P1, P2, P3). P1 encodes for a proteins (VP1, VP2, VP3, and VP4) that make the capsid proteins. P2 and P3 proteins assist in infectivity of the picornavirus to hijack and interfere with host cell functionality. Specifically, 2B, 2C, and 3A proteins interfere with host cell function and the 3D protein encodes as the RNA polymerase. 2A and 3C act as proteinases and their function varies among the different genera of picornavirus.
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