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Rex1

Rex1 is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Rex1 rather than just read about it. In short: Rex1 (Zfp-42) is a known marker of pluripotency, and is usually found in undifferentiated embryonic stem cells. In addition to being a marker for pluripotency, its regulation is also critical in maintaining a pluripotent state.

Rex1 — main illustration
Rex1 — illustration

Key takeaways

  • Rex1 belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Rex1 to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Rex1 from memory before moving on to harder problems.

Reference excerpt

Rex1 (Zfp-42) is a known marker of pluripotency, and is usually found in undifferentiated embryonic stem cells. In addition to being a marker for pluripotency, its regulation is also critical in maintaining a pluripotent state. As the cells begin to differentiate, Rex1 is severely and abruptly downregulated.

Discovery Rex1 was discovered by Hosler, BA et al. in 1989 when studying F9 murine teratocarcinoma stem cells. They found that these teratocarcinoma stem cells expressed high levels of Rex1, and that they resembled pluripotent stem cells of the inner cell mass (ICM). Hosler, BA et al. found that these teratocarcinoma stem cells, when in the presence of retinoic acid (RA), differentiated into nontumorigenic cells resembling extraembryonic endoderm of early mouse embryos. They were able to isolate the nucleotide sequence for Rex1 using differential hybridization of an F9 cell. They named it Rex1 for reduced expression 1 because there was a steady decline of its mRNA levels within 12 hours of the addition of RA.

Structure Rex1 is a protein that in humans is encoded by the ZFP42 gene. The Rex1 protein is 310 amino acids long, and has four closely spaced zinc fingers at 188–212, 217–239, 245–269, and 275–299.

p38 MAPK & Mesenchymal Stem Cells Rex1 has been found to be critically important in maintaining proliferative state in mesenchymal stem cells (MSC), while simultaneously preventing differentiation. Both umbilical cord blood MSC and adipose MSC express high levels of Rex1, while bone marrow MSC expressed low levels of Rex1. Proliferation rates are highly correlated with Rex1 expression levels, meaning high Rex1 expression is correlated with high levels of proliferation. The MSCs with weak Rex1 expression, have activated p38 MAPK and high expression levels of MKK3. Thus, Rex1 expression is inversely correlated with p38 MAPK activation, and positively correlated with high proliferation rates. Rex1 was found to inhibit MKK3 expression, which activates p38 MAPK. Activated p38 MAPK, in turn, inhibits proliferation. Rex1 was also found to inhibit NOTCH and STAT3, two transcription factors which lead to differentiation. Therefore, Rex1 expression allows for high levels of proliferation, and prevents differentiation through a network of various transcription factors and protein kinases.

Embryo Development

Tissue Derivation During embryogenesis, the inner cell mass (ICM) is separated from the trophoblast. The stem cells derived from the ICM and trophectoderm have been found to express high levels of Oct3/4 and Rex1. As the ICM matures and begins to form the epiblast, and primitive ectoderm, the cells in the ICM have been found to be a heterogenous population, with varying levels of Rex1 expression. Rex1−/Oct3/4− triggers trophectoderm differentiation, while Rex1+/Oct3/4+ cells predominantly differentiate into primitive endoderm and mesoderm. Also, Rex1−/Oct3/4+ cells differentiate into cells of primitive ectoderm, the somatic cell lineage.

Gene Control Studies have shown that PEG3 and Nespas are downstream targets of Rex1. Rex1 can control the expression of Peg3 via epigenetic changes. YY1 has been shown to be involved in setting up DNA methylation on the maternal allele of PEG3 during oogenesis. Rex1 was found to protect the paternal allele from being methylated, and keep the PEG3 gene unmethylated during early embryogenesis. Rex1 exhibits gene control in developing embryos via its epigenetic control on genes such as PEG3, which has been identified as playing a key role in fetal growth rates

Expression in Adult Tissues The only adult tissue Rex1 has been identified in are the testicles. Using in situ hybridization it was determined that the spermatocytes in the more inner layers of the testicles are expressing Rex1. Thus, the male germ cells undergoing meiosis are the specific cells in the testicles that express Rex1. It has not been observed, however, that Rex1 is expressed in the female germ cells.

Rex1 Interactions with Other Transcription Factors Rex1 participates in a network of transcription factors that all work to regulate each other via varying expression levels.

Nanog The Nanog protein has been found to be a transcriptional activator for the Rex-1 promoter, playing a key role in sustaining Rex1 expression. Knockdown of Nanog in embryonic stem cells results in a reduction of Rex-1 expression, while forced expression of Nanog stimulates Rex-1 expression. Nanog regulates the transcription of Rex1 through 2 strong transactivation domains on the C-terminus which are required to activate the Rex1 promoter.

NOTCH Rex1 has been found to inhibit the expression of NOTCH, thus preventing differentiation.

STAT3 Rex1 has been found to inhibit the expression of STAT3, thus preventing differentiation.

Sox2 Cooperative regulation of Rex1 is seen with Sox2 and Nanog.

Oct3/4 Oct3/4 can both repress and activate the Rex1 promoter. In cells that already express high level of Oct3/4, exogenously transfected Oct3/4 will lead to the repression of Rex1. However, in cells that are not actively expressing Oct3/4, an exogenous transfection of Oct3/4 will lead to the activation of Rex1. This implies a dual regulatory ability of Oct3/4 on Rex1. At low levels of the Oct3/4 protein, the Rex1 promoter is activated, while at high levels of the Oct3/4 protein, the Rex1 promoter is repressed.

References

Further reading

Illustrations

Rex1 illustration
Rex1 illustration
Rex1 illustration
Rex1 illustration
Rex1 illustration

Worked examples

Example 1 — a first encounter with Rex1

Start with the simplest possible case. Write down what Rex1 claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Rex1 before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Rex1 ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Rex1

In research
Rex1 appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Rex1 in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Rex1 is common in secondary-school and first-year university syllabi. It links to neighbouring topics Genes on human chromosome 4, Stem cells, so understanding it makes those chapters shorter.
In everyday life
Look for Rex1 outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Rex1 in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Rex1 means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Rex1 out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Rex1 in simple terms?

Rex1 (Zfp-42) is a known marker of pluripotency, and is usually found in undifferentiated embryonic stem cells. In addition to being a marker for pluripotency, its regulation is also critical in maintaining a pluripotent state.

Why does Rex1 matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Rex1?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Rex1.

Tags

  • Genes on human chromosome 4
  • Stem cells

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