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Soft X-ray microscopy

Soft X-ray microscopy is a science topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Soft X-ray microscopy rather than just read about it. In short: An X-ray microscope uses electromagnetic radiation in the soft X-ray band to produce images of very small objects. Unlike visible light, X-rays do not reflect or refract easily, and they are invisible to the human eye.

Soft X-ray microscopy — main illustration
Soft X-ray microscopy — illustration

Key takeaways

  • Soft X-ray microscopy belongs to science; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Soft X-ray microscopy to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Soft X-ray microscopy from memory before moving on to harder problems.

Reference excerpt

An X-ray microscope uses electromagnetic radiation in the soft X-ray band to produce images of very small objects. Unlike visible light, X-rays do not reflect or refract easily, and they are invisible to the human eye. Therefore, the basic process of an X-ray microscope is to expose film or use a charge-coupled device (CCD) detector to detect X-rays that pass through the specimen. It is a contrast imaging technology using the difference in absorption of soft X-ray in the water window region (wavelength region: 2.34–4.4 nm, photon energy region: 280 – 530 eV) by the carbon atom (main element composing the living cell) and the oxygen atom (main element for water).

Development Early X-ray microscopes by Paul Kirkpatrick and Albert Baez used grazing incidence reflective optics to focus the X-rays, which grazed X-rays off parabolic curved mirrors at a very high angle of incidence. An alternative method of focusing X-rays is to use a tiny fresnel zone plate of concentric gold or nickel rings on a silicon dioxide substrate. Sir Lawrence Bragg produced some of the first usable X-ray images with his apparatus in the late 1940s.

In the 1950s Newberry produced a shadow X-ray microscope which placed the specimen between the source and a target plate, this became the basis for the first commercial X-ray microscopes from the General Electric Company.

Notable soft X-ray microscopes The Advanced Light Source (ALS) in Berkeley, California, is home to XM-1 (http://www.cxro.lbl.gov/BL612/), a full field soft X-ray microscope operated by the Center for X-ray Optics and dedicated to various applications in modern nanoscience, such as nanomagnetic materials, environmental and materials sciences and biology. XM-1 uses an X-ray lens to focus X-rays on a CCD, in a manner similar to an optical microscope. XM-1 held the world record in spatial resolution with Fresnel zone plates down to 15 nm and is able to combine high spatial resolution with a sub-100ps time resolution to study e.g. ultrafast spin dynamics. In July 2012, a group at DESY claimed a record spatial resolution of 10 nm, by using the hard X-ray scanning microscope at PETRA III. The ALS is also home to the world's first soft X-ray microscope designed for biological and biomedical research. This new instrument, XM-2 was designed and built by scientists from the National Center for X-ray Tomography. XM-2 is capable of producing 3-Dimensional tomograms of cells.

Characteristics and uses Sources of soft X-rays suitable for microscopy, such as synchrotron radiation sources, have fairly low brightness of the required wavelengths, so an alternative method of image formation is scanning transmission soft X-ray microscopy. Here the X-rays are focused to a point and the sample is mechanically scanned through the produced focal spot. At each point the transmitted X-rays are recorded with a detector such as a proportional counter or an avalanche photodiode. This type of Scanning Transmission X-ray Microscope (STXM) was first developed by researchers at Stony Brook University and was employed at the National Synchrotron Light Source at Brookhaven National Laboratory. The resolution of X-ray microscopy lies between that of the optical microscope and the electron microscope. It has an advantage over conventional electron microscopy in that it can view biological samples in their natural state. Electron microscopy is widely used to obtain images with nanometer level resolution but the relatively thick living cell cannot be observed as the sample has to be chemically fixed, dehydrated, embedded in resin, then sliced ultra thin. However, it should be mentioned that cryo-electron microscopy allows the observation of biological specimens in their hydrated natural state, albeit embedded in water ice. Until now, resolutions of 30 nanometer are possible using the Fresnel zone plate lens which forms the image using the soft X-rays emitted from a synchrotron. Recently, the use of soft X-rays emitted from laser-produced plasmas rather than synchrotron radiation is becoming more popular. Additionally, X-rays cause fluorescence in most materials, and these emissions can be analyzed to determine the chemical elements of an imaged object. Another use is to generate diffraction patterns, a process used in X-ray crystallography. By analyzing the internal reflections of a diffraction pattern (usually with a computer program), the three-dimensional structure of a crystal can be determined down to the placement of individual atoms within its molecules. X-ray microscopes are sometimes used for these analyses because the samples are too small to be analyzed in any other way.

See also Synchrotron X-ray tomographic microscopy X-ray microscope Electron microscope

References

External links Yamamoto Y, Shinohara K (October 2002). "Application of X-ray microscopy in analysis of living hydrated cells". Anat. Rec. 269 (5): 217–23. doi:10.1002/ar.10166. PMID 12379938. S2CID 43009840. Kamijo N, Suzuki Y, Awaji M, et al. (May 2002). "Hard X-ray microbeam experiments with a sputtered-sliced Fresnel zone plate and its applications". J Synchrotron Radiat. 9 (Pt 3): 182–6. doi:10.1107/S090904950200376X. PMID 11972376. Scientific applications of soft X-ray microscopy National Center for X-ray Tomography Arndt Last. "X-ray microscopy". Retrieved 17 October 2012.

Illustrations

Soft X-ray microscopy: A square beryllium foil mounted in a steel case to be used as a window between a vacuum chamber and an X-ray microscope. Beryllium, due to its low Z number, is highly transparent to X-rays.
A square beryllium foil mounted in a steel case to be used as a window between a vacuum chamber and an X-ray microscope. Beryllium, due to its low Z number, is highly transparent to X-rays.

Worked examples

Example 1 — a first encounter with Soft X-ray microscopy

Start with the simplest possible case. Write down what Soft X-ray microscopy claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In science, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Soft X-ray microscopy before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Soft X-ray microscopy ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Soft X-ray microscopy

In research
Soft X-ray microscopy appears in science research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Soft X-ray microscopy in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Soft X-ray microscopy is common in secondary-school and first-year university syllabi. It links to neighbouring topics Microscopy, X-rays, so understanding it makes those chapters shorter.
In everyday life
Look for Soft X-ray microscopy outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Soft X-ray microscopy in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Soft X-ray microscopy means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Soft X-ray microscopy out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Soft X-ray microscopy in simple terms?

An X-ray microscope uses electromagnetic radiation in the soft X-ray band to produce images of very small objects. Unlike visible light, X-rays do not reflect or refract easily, and they are invisible to the human eye.

Why does Soft X-ray microscopy matter?

Because it connects several science ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Soft X-ray microscopy?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Soft X-ray microscopy.

Tags

  • Microscopy
  • X-rays

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