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Somite

Somite is a science topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Somite rather than just read about it. In short: The somites (outdated term: primitive segments) are a set of bilaterally paired blocks of paraxial mesoderm that form in the embryonic stage of somitogenesis, along the head-to-tail axis in segmented animals. In vertebrates, somites subdivide into the dermatomes, myotomes, sclerotomes and syndetomes that give rise to the vertebrae of the vertebral column, rib cage, part of the occipital bone, skeletal muscle, cartil…

Somite — main illustration
Somite — illustration

Key takeaways

  • Somite belongs to science; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Somite to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Somite from memory before moving on to harder problems.

Reference excerpt

The somites (outdated term: primitive segments) are a set of bilaterally paired blocks of paraxial mesoderm that form in the embryonic stage of somitogenesis, along the head-to-tail axis in segmented animals. In vertebrates, somites subdivide into the dermatomes, myotomes, sclerotomes and syndetomes that give rise to the vertebrae of the vertebral column, rib cage, part of the occipital bone, skeletal muscle, cartilage, tendons, and skin (of the back). The word somite is sometimes also used in place of the word metamere. In this definition, the somite is a homologously-paired structure in an animal body plan, such as is visible in annelids and arthropods.

Development

The mesoderm forms at the same time as the other two germ layers, the ectoderm and endoderm. The mesoderm at either side of the neural tube is called paraxial mesoderm. It is distinct from the mesoderm underneath the neural tube, which is called the chordamesoderm that becomes the notochord. The paraxial mesoderm is initially called the "segmental plate" in the chick embryo or the "unsegmented mesoderm" in other vertebrates. As the primitive streak regresses and neural folds gather (to eventually become the neural tube), the paraxial mesoderm separates into blocks called somites.

Formation

The pre-somitic mesoderm commits to the somitic fate before mesoderm becomes capable of forming somites. The cells within each somite are specified based on their location within the somite. Additionally, they retain the ability to become any kind of somite-derived structure until relatively late in the process of somitogenesis. The development of the somites depends on a clock mechanism as described by the clock and wavefront model. In one description of the model, oscillating Notch and Wnt signals provide the clock. The wave is a gradient of the fibroblast growth factor protein that is rostral to caudal (nose to tail gradient). Somites form one after the other down the length of the embryo from the head to the tail, with each new somite forming on the caudal (tail) side of the previous one. The timing of the interval is not universal. Different species have different interval timing. In the chick embryo, somites are formed every 90 minutes. In the mouse the interval is 2 hours. For some species, the number of somites may be used to determine the stage of embryonic development more reliably than the number of hours post-fertilization because rate of development can be affected by temperature or other environmental factors. The somites appear on both sides of the neural tube simultaneously. Experimental manipulation of the developing somites will not alter the rostral/caudal orientation of the somites, as the cell fates have been determined prior to somitogenesis. Somite formation can be induced by Noggin-secreting cells. The number of somites is species dependent and independent of embryo size (for example, if modified via surgery or genetic engineering). Chicken embryos have 50 somites; mice have 65, while snakes have 500. As cells within the paraxial mesoderm begin to come together, they are termed somitomeres, indicating a lack of complete separation between segments. The outer cells undergo a mesenchymal–epithelial transition to form an epithelium around each somite. The inner cells remain as mesenchyme.

Notch signalling

The Notch system, as part of the clock and wavefront model, forms the boundaries of the somites. DLL1 and DLL3 are Notch ligands, mutations of which cause various defects. Notch regulates HES1, which sets up the caudal half of the somite. Notch activation turns on LFNG which in turn inhibits the Notch receptor. Notch activation also turns on the HES1 gene which inactivates LFNG, re-enabling the Notch receptor, and thus accounting for the oscillating clock model. MESP2 induces the EPHA4 gene, which causes repulsive interaction that separates somites by causing segmentation. EPHA4 is restricted to the boundaries of somites. EPHB2 is also important for boundaries.

Mesenchymal-epithelial transition Fibronectin and N-cadherin are key to the mesenchymal–epithelial transition process in the developing embryo. The process is probably regulated by Paraxis (Transcription factor 15) and MESP2. In turn, MESP2 is regulated by Notch signaling. Paraxis is regulated by processes involving the cytoskeleton.

Specification

The Hox genes specify somites as a whole based on their position along the anterior-posterior axis through specifying the pre-somitic mesoderm before somitogenesis occurs. After somites are made, their identity as a whole has already been determined, as is shown by the fact that transplantation of somites from one region to a completely different region results in the formation of structures usually observed in the original region. In contrast, the cells within each somite retain plasticity (the ability to form any kind of structure) until relatively late in somitic development.

Derivatives

In the vertebrate embryonic development, somites split to form dermatomes, skeletal muscle (myotomes), vertebral tendons and ligaments (syndetomes) and bone (sclerotomes).

Because the sclerotome differentiates before the dermatome and the myotome, the term dermomyotome refers to the combined dermatome and myotome before they separate out.

Dermatome The dermatome is the dorsal portion of the paraxial mesoderm somite which gives rise to the skin (dermis). In the human embryo, it arises in the third week of embryogenesis. It is formed when a dermomyotome (the remaining part of the somite left when the sclerotome migrates), splits to form the dermatome and the myotome. The dermatomes contribute to the skin, fat and connective tissue of the neck and of the trunk, though most of the skin is derived from lateral plate mesoderm.

Myotome The myotome is that part of a somite that forms the muscles of the animal. Each myotome divides into an epaxial part (epimere), at the back, and a hypaxial part (hypomere) at the front. The myoblasts from the hypaxial division form the muscles of the thoracic and anterior abdominal walls. The epaxial muscle mass loses its segmental character to form the extensor muscles of the neck and trunk of mammals. In fishes, salamanders, caecilians, and reptiles, the body musculature remains segmented as in the embryo, though it often becomes folded and overlapping, with epaxial and hypaxial masses divided into several distinct muscle groups.

Sclerotome

… excerpt ends here. Continue reading the full article.

Illustrations

Somite illustration
Somite illustration
Somite: Chick embryo of thirty-three hours' incubation, viewed from the dorsal aspect. X 30
Chick embryo of thirty-three hours' incubation, viewed from the dorsal aspect. X 30
Somite: Transverse section of a human embryo of the third week to show the differentiation of the primitive segment. ao. Aorta. m.p. 'Muscle-plate' (myotome). n.c. Neural canal. sc. Sclerotome. s.p. 'Skin-plate' (dermatome)
Transverse section of a human embryo of the third week to show the differentiation of the primitive segment. ao. Aorta. m.p. 'Muscle-plate' (myotome). n.c. Neural canal. sc. Sclerotome. s.p. 'Skin-plate' (dermatome)
Somite: Scheme showing how each vertebral centrum is developed from portions of two adjacent segments. Myotome labelled in upper left.
Scheme showing how each vertebral centrum is developed from portions of two adjacent segments. Myotome labelled in upper left.

Worked examples

Example 1 — a first encounter with Somite

Start with the simplest possible case. Write down what Somite claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In science, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Somite before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Somite ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Somite

In research
Somite appears in science research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Somite in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Somite is common in secondary-school and first-year university syllabi. It links to neighbouring topics Embryology, so understanding it makes those chapters shorter.
In everyday life
Look for Somite outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.

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How to study Somite in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Somite means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Somite out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Somite in simple terms?

The somites (outdated term: primitive segments) are a set of bilaterally paired blocks of paraxial mesoderm that form in the embryonic stage of somitogenesis, along the head-to-tail axis in segmented animals. In vertebrates, somites subdivide into the dermatomes, myotomes, sclerotomes and syndetome…

Why does Somite matter?

Because it connects several science ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Somite?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Somite.

Tags

  • Embryology

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