In computer science, a suffix automaton is an efficient data structure for representing the substring index of a given string which allows the storage, processing, and retrieval of compressed information about all its substrings. The suffix automaton of a string S {\displaystyle S} is the smallest directed acyclic graph with a dedicated initial vertex and a set of "final" vertices, such that paths from the initial vertex to final vertices represent the suffixes of the string. In terms of automata theory, a suffix automaton is the minimal partial deterministic finite automaton that recognizes the set of suffixes of a given string S = s 1 s 2 … s n {\displaystyle S=s_{1}s_{2}\dots s_{n}} . The state graph of a suffix automaton is called a directed acyclic word graph (DAWG), a term that is also sometimes used for any deterministic acyclic finite state automaton. Suffix automata were introduced in 1983 by a group of scientists from the University of Denver and the University of Colorado Boulder. They suggested a linear time online algorithm for its construction and showed that the suffix automaton of a string S {\displaystyle S} having length at least two characters has at most 2 | S | − 1 {\textstyle 2|S|-1} states and at most 3 | S | − 4 {\textstyle 3|S|-4} transitions. Further works have shown a close connection between suffix automata and suffix trees, and have outlined several generalizations of suffix automata, such as compacted suffix automaton obtained by compression of nodes with a single outgoing arc. Suffix automata provide efficient solutions to problems such as substring search and computation of the largest common substring of two and more strings.
History
The concept of suffix automaton was introduced in 1983 by a group of scientists from University of Denver and University of Colorado Boulder consisting of Anselm Blumer, Janet Blumer, Andrzej Ehrenfeucht, David Haussler and Ross McConnell, although similar concepts had earlier been studied alongside suffix trees in the works of Peter Weiner, Vaughan Pratt and Anatol Slissenko. In their initial work, Blumer et al. showed a suffix automaton built for the string S {\displaystyle S} of length greater than 1 {\displaystyle 1} has at most 2 | S | − 1 {\displaystyle 2|S|-1} states and at most 3 | S | − 4 {\displaystyle 3|S|-4} transitions, and suggested a linear algorithm for automaton construction. In 1983, Mu-Tian Chen and Joel Seiferas independently showed that Weiner's 1973 suffix-tree construction algorithm while building a suffix tree of the string S {\displaystyle S} constructs a suffix automaton of the reversed string S R {\textstyle S^{R}} as an auxiliary structure. In 1987, Blumer et al. applied the compressing technique used in suffix trees to a suffix automaton and invented the compacted suffix automaton, which is also called the compacted directed acyclic word graph (CDAWG). In 1997, Maxime Crochemore and Renaud Vérin developed a linear algorithm for direct CDAWG construction. In 2001, Shunsuke Inenaga et al. developed an algorithm for construction of CDAWG for a set of words given by a trie.
Definitions Usually when speaking about suffix automata and related concepts, some notions from formal language theory and automata theory are used, in particular:
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