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TP53-inducible glycolysis and apoptosis regulator

TP53-inducible glycolysis and apoptosis regulator is a biology topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand TP53-inducible glycolysis and apoptosis regulator rather than just read about it. In short: The TP53-inducible glycolysis and apoptosis regulator (TIGAR) also known as fructose-2,6-bisphosphatase TIGAR is an enzyme that in humans is encoded by the TIGAR gene (previously C12orf5). TIGAR is a recently discovered enzyme that primarily functions as a regulator of glucose breakdown in human cells.

TP53-inducible glycolysis and apoptosis regulator — main illustration
TP53-inducible glycolysis and apoptosis regulator — illustration

Key takeaways

  • TP53-inducible glycolysis and apoptosis regulator belongs to biology; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect TP53-inducible glycolysis and apoptosis regulator to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of TP53-inducible glycolysis and apoptosis regulator from memory before moving on to harder problems.

Reference excerpt

The TP53-inducible glycolysis and apoptosis regulator (TIGAR) also known as fructose-2,6-bisphosphatase TIGAR is an enzyme that in humans is encoded by the TIGAR gene (previously C12orf5). TIGAR is a recently discovered enzyme that primarily functions as a regulator of glucose breakdown in human cells. In addition to its role in controlling glucose degradation, TIGAR activity can allow a cell to carry out DNA repair, and the degradation of its own organelles. Finally, TIGAR can protect a cell from death. Since its discovery in 2005 by Kuang-Yu Jen and Vivian G. Cheung, TIGAR has become of particular interest to the scientific community thanks to its active role in many cancers. Normally, TIGAR manufactured by the body is activated by the p53 tumour suppressor protein after a cell has experienced a low level of DNA damage or stress. In some cancers, TIGAR has fallen under the control of other proteins. The hope is that future research into TIGAR will provide insight into new ways to treat cancer. This gene is regulated as part of the p53 tumor suppressor pathway and encodes a protein with sequence similarity to the bisphosphate domain of the glycolytic enzyme that degrades fructose-2,6-bisphosphate. The protein functions by blocking glycolysis and directing the pathway into the pentose phosphate shunt. Expression of this protein also protects cells from DNA damaging reactive oxygen species and provides some protection from DNA damage-induced apoptosis. The 12p13.32 region that includes this gene is paralogous to the 11q13.3 region.

Gene In humans the TIGAR gene, known as C12orf5, is found on chromosome 12p13-3, and consists of 6 exons. The C12orf5 mRNA is 8237 base pairs in length.

Discovery Jen and Cheung first discovered the c12orf5 gene whilst using computer based searches to find novel p53-regulated genes that were switched on in response to ionizing radiation. They published their research in Cancer Research in 2005. Later a study focused wholly on the structure and function of the c12orf5 gene was published in Cell by Karim Bensaad et al., in which c12orf5 was given the name TIGAR in honour of its apparent function.

Expression TIGAR transcription is rapidly activated by the p53 tumour suppressor protein in response to low levels of cellular stress, such as that caused by exposure to low doses of UV. However, under high levels of cellular stress TIGAR expression decreases. P53, a transcription factor, can bind two sites within the human TIGAR gene to activate expression. One site is found within the first intron, and binds p53 with high affinity. The second is found just prior to the first exon, binds p53 with low affinity, and is conserved between mice and humans. TIGAR expression can be regulated by other non-p53 mechanisms in tumour cell lines.

Structure

TIGAR is approximately 30kDa and has a tertiary structure that is similar to the histidine phosphatase fold. The core of TIGAR is made up of an α-β-α sandwich, which consists of a six-stranded β sheet surrounded by 4 α helices. Additional α helices and a long loop are built around the core to give the full enzyme. TIGAR has an active site that is structurally similar to that of PhoE (a bacterial phosphatase enzyme) and functionally similar to that of fructose-2,6-bisphosphatase. The bis-phosphatase-like active site of TIGAR is positively charged, and catalyses the removal of phosphate groups from other molecules. In contrast to Fructose-2,6-Bisphosphatase, TIGAR's active site is open and accessible like that of PhoE. The site contains 3 crucial amino acids (2 histidines and 1 glutamic acid) that are involved in the phosphatase reaction. These 3 residues are known collectively as a catalytic triad, and are found in all enzymes belonging to the phosphoglyceromutase branch of the histidine phosphatase superfamily. One of the histidine residues is electrostatically bound to a negatively charged phosphate. A second phosphate is bound elsewhere in the active site.

Function TIGAR activity can have multiple cellular effects. TIGAR acts as a direct regulator of fructose-2,6-bisphosphate levels and hexokinase 2 activity, and this can lead indirectly to many changes within the cell in a chain of biochemical events. TIGAR is a fructose bisphosphatase which activates p53, in results of inhibiting the expression of glucose transporter and also regulating the expression of hexokinase and phosphoglycerate mutase. TIGAR also inhibit the Phosphofructokinase (PFK) by lowering the level of fructose-2,6,bisphosphate, therefore, glycolysis is inhibited and pentose phosphate pathway is promoted.

Fructose-2,6-bisphosphate regulation TIGAR decreases cellular fructose-2,6-bisphosphate levels. It catalyses the removal of a phosphate group from fructose-2,6-bisphosphate (F-2,6-BP): Fructose-2,6-Bisphosphate->Fructose-6-phosphate (F-6-P) + phosphate F-2,6-BP is an allosteric regulator of cellular glucose metabolism pathways. Ordinarily F-2,6-BP binds to and increases the activity of phosphofructokinase 1. Phosphofructokinase-1 catalyses the addition of a phosphate to F-6-P to form Fructose-1,6-bisphosphate (F-1,6-BP). This is an essential step in the glycolysis pathway, which forms the first part of aerobic respiration in mammals. F-2,6-BP also binds to and decreases the activity of fructose-1,6-bisphosphatase. Fructose-1,6-bisphosphatase catalyses the removal of phosphate from F-1,6-BP to form F-6-P. This reaction is part of the gluconeogenesis pathway, which synthesizes glucose, and is the reverse of glycolysis. When TIGAR decreases F-2,6-BP levels, phosphofructokinase becomes less active whilst fructose-1,6-bisphosphatase activity increases. Fructose-6-phosphate levels build up, which has multiple effects inside the cell:

The rate of glycolysis decreases The rate of gluconeogenesis increases Excess fructose-6-phosphate is converted to glucose-6-phosphate in an isomerization reaction Excess glucose-6-phosphate enters the pentose phosphate pathway. This ultimately leads to the removal of reactive oxygen species (ROS) in the cell The removal of ROS helps to prevent apoptosis (cell suicide), and may also reduce build-up of DNA damage over time.

… excerpt ends here. Continue reading the full article.

Illustrations

TP53-inducible glycolysis and apoptosis regulator illustration
TP53-inducible glycolysis and apoptosis regulator illustration
TP53-inducible glycolysis and apoptosis regulator illustration
TP53-inducible glycolysis and apoptosis regulator illustration
TP53-inducible glycolysis and apoptosis regulator illustration

Worked examples

Example 1 — a first encounter with TP53-inducible glycolysis and apoptosis regulator

Start with the simplest possible case. Write down what TP53-inducible glycolysis and apoptosis regulator claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In biology, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to TP53-inducible glycolysis and apoptosis regulator before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about TP53-inducible glycolysis and apoptosis regulator ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of TP53-inducible glycolysis and apoptosis regulator

In research
TP53-inducible glycolysis and apoptosis regulator appears in biology research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses TP53-inducible glycolysis and apoptosis regulator in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
TP53-inducible glycolysis and apoptosis regulator is common in secondary-school and first-year university syllabi. It links to neighbouring topics Apoptosis, Genes on human chromosome 12, Glycolysis, so understanding it makes those chapters shorter.
In everyday life
Look for TP53-inducible glycolysis and apoptosis regulator outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study TP53-inducible glycolysis and apoptosis regulator in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what TP53-inducible glycolysis and apoptosis regulator means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain TP53-inducible glycolysis and apoptosis regulator out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is TP53-inducible glycolysis and apoptosis regulator in simple terms?

The TP53-inducible glycolysis and apoptosis regulator (TIGAR) also known as fructose-2,6-bisphosphatase TIGAR is an enzyme that in humans is encoded by the TIGAR gene (previously C12orf5). TIGAR is a recently discovered enzyme that primarily functions as a regulator of glucose breakdown in human ce…

Why does TP53-inducible glycolysis and apoptosis regulator matter?

Because it connects several biology ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study TP53-inducible glycolysis and apoptosis regulator?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on TP53-inducible glycolysis and apoptosis regulator.

Tags

  • Apoptosis
  • Genes on human chromosome 12
  • Glycolysis
  • Human proteins

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