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Tomographic reconstruction

Tomographic reconstruction is a science topic covered in the lgStudy science library. This page brings together a partial reference excerpt, illustrations, worked examples, real-world applications and a short study plan, so you can understand Tomographic reconstruction rather than just read about it. In short: Tomographic reconstruction is a type of multidimensional inverse problem where the challenge is to yield an estimate of a specific system from a finite number of projections. The mathematical basis for tomographic imaging was laid down by Johann Radon.

Tomographic reconstruction — main illustration
Tomographic reconstruction — illustration

Key takeaways

  • Tomographic reconstruction belongs to science; place it in that map before memorising details.
  • Learn the definition first, then one example that makes the definition concrete.
  • Connect Tomographic reconstruction to a quantity you can measure, compute or draw — that is where exam questions come from.
  • Reproduce the core statement of Tomographic reconstruction from memory before moving on to harder problems.

Reference excerpt

Tomographic reconstruction is a type of multidimensional inverse problem where the challenge is to yield an estimate of a specific system from a finite number of projections. The mathematical basis for tomographic imaging was laid down by Johann Radon. A notable example of applications is the reconstruction of computed tomography (CT) where cross-sectional images of patients are obtained in non-invasive manner. Recent developments have seen the Radon transform and its inverse used for tasks related to realistic object insertion required for testing and evaluating computed tomography use in airport security. This article applies in general to reconstruction methods for all kinds of tomography, but some of the terms and physical descriptions refer directly to the reconstruction of X-ray computed tomography.

Introducing formula

The projection of an object, resulting from the tomographic measurement process at a given angle θ {\displaystyle \theta } , is made up of a set of line integrals (see Fig. 1). A set of many such projections under different angles organized in 2D is called a sinogram (see Fig. 3). In X-ray CT, the line integral represents the total attenuation of the beam of X-rays as it travels in a straight line through the object. As mentioned above, the resulting image is a 2D (or 3D) model of the attenuation coefficient. That is, we wish to find the image μ ( x , y ) {\displaystyle \mu (x,y)} . The simplest and easiest way to visualise the method of scanning is the system of parallel projection, as used in the first scanners. For this discussion we consider the data to be collected as a series of parallel rays, at position r {\displaystyle r} , across a projection at angle θ {\displaystyle \theta } . This is repeated for various angles. Attenuation occurs exponentially in tissue:

I = I 0 exp ⁡ ( − ∫ μ ( x , y ) d s ) {\displaystyle I=I_{0}\exp \left({-\int \mu (x,y)\,ds}\right)}

where μ ( x , y ) {\displaystyle \mu (x,y)} is the attenuation coefficient as a function of position. Therefore, generally the total attenuation p {\displaystyle p} of a ray at position r {\displaystyle r} , on the projection at angle θ {\displaystyle \theta } , is given by the line integral:

p θ ( r ) = ln ⁡ ( I I 0 ) = − ∫ μ ( x , y ) d s {\displaystyle p_{\theta }(r)=\ln \left({\frac {I}{I_{0}}}\right)=-\int \mu (x,y)\,ds}

Using the coordinate system of Figure 1, the value of r {\displaystyle r} onto which the point ( x , y ) {\displaystyle (x,y)} will be projected at angle θ {\displaystyle \theta } is given by:

x cos ⁡ θ + y sin ⁡ θ = r {\displaystyle x\cos \theta +y\sin \theta =r\ }

So the equation above can be rewritten as

p θ ( r ) = ∫ − ∞ ∞ ∫ − ∞ ∞ f ( x , y ) δ ( x cos ⁡ θ + y sin ⁡ θ − r ) d x d y {\displaystyle p_{\theta }(r)=\int _{-\infty }^{\infty }\int _{-\infty }^{\infty }f(x,y)\delta (x\cos \theta +y\sin \theta -r)\,dx\,dy}

where f ( x , y ) {\displaystyle f(x,y)} represents μ ( x , y ) {\displaystyle \mu (x,y)} and δ ( ) {\displaystyle \delta ()} is the Dirac delta function. This function is known as the Radon transform (or sinogram) of the 2D object. The Fourier Transform of the projection can be written as

… excerpt ends here. Continue reading the full article.

Illustrations

Tomographic reconstruction: Figure 1: Parallel beam geometry utilized in tomography and tomographic reconstruction. Each projection, resulting from tomography under a specific angle, is made up of the set of line integrals through the object.
Figure 1: Parallel beam geometry utilized in tomography and tomographic reconstruction. Each projection, resulting from tomography under a specific angle, is made up of the set of line integrals through the object.
Tomographic reconstruction: Resulting tomographic image from a plastic skull phantom. Projected X-rays are clearly visible on this slice taken with a CT-scan as image artifacts, due to limited amount of projection slices over angles.
Resulting tomographic image from a plastic skull phantom. Projected X-rays are clearly visible on this slice taken with a CT-scan as image artifacts, due to limited amount of projection slices over angles.
Tomographic reconstruction: A fan-beam reconstruction of Shepp-Logan Phantom with different sensor spacing. Smaller spacing between the sensors allow finer reconstruction. The figure was generated by using MATLAB.
A fan-beam reconstruction of Shepp-Logan Phantom with different sensor spacing. Smaller spacing between the sensors allow finer reconstruction. The figure was generated by using MATLAB.
Tomographic reconstruction: The influence of Poisson noise in deep learning reconstruction where Poisson noise causes the U-Net to fail to reconstruct an existing high contrast lesion-like object.
The influence of Poisson noise in deep learning reconstruction where Poisson noise causes the U-Net to fail to reconstruct an existing high contrast lesion-like object.
Tomographic reconstruction illustration

Worked examples

Example 1 — a first encounter with Tomographic reconstruction

Start with the simplest possible case. Write down what Tomographic reconstruction claims or describes in one sentence, then invent the smallest concrete situation in which that sentence is true. In science, the smallest case is usually a single object, a single equation or a single measurement. Check that every symbol or term in your sentence has a meaning in that case.

Example 2 — changing one variable

Take the situation from Example 1 and change exactly one quantity: double it, halve it, or set it to zero. Predict what should happen to Tomographic reconstruction before you calculate. Comparing your prediction with the result is the fastest way to find out whether you understand the idea or only the words.

Example 3 — an exam-style question

Typical questions about Tomographic reconstruction ask you to (a) state it precisely, (b) apply it to given data, and (c) explain a limitation. Practise writing all three answers in under five minutes; the third part is what separates a full-mark answer from an average one.

Applications of Tomographic reconstruction

In research
Tomographic reconstruction appears in science research whenever the underlying quantities have to be modelled precisely. Papers usually cite it as a starting assumption and then explore where it breaks down.
In technology and industry
Engineering practice reuses Tomographic reconstruction in design rules, simulations and safety margins. Knowing the idea lets you read a specification sheet and understand why the numbers look the way they do.
In the classroom
Tomographic reconstruction is common in secondary-school and first-year university syllabi. It links to neighbouring topics Inverse problems, Medical imaging, Multidimensional signal processing, so understanding it makes those chapters shorter.
In everyday life
Look for Tomographic reconstruction outside the textbook — in sport, cooking, traffic, electronics or the sky above you. An example you found yourself is remembered far longer than one you were given.
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How to study Tomographic reconstruction in 20 minutes

  1. Read the reference excerpt below once, without taking notes.
  2. Close the page and write down what Tomographic reconstruction means in your own words.
  3. Compare your version with the excerpt and mark what you missed.
  4. Work through the three examples above with pen and paper.
  5. Explain Tomographic reconstruction out loud to somebody else — or to Teacher Smith in the lgStudy chat.

Frequently asked questions

What is Tomographic reconstruction in simple terms?

Tomographic reconstruction is a type of multidimensional inverse problem where the challenge is to yield an estimate of a specific system from a finite number of projections. The mathematical basis for tomographic imaging was laid down by Johann Radon.

Why does Tomographic reconstruction matter?

Because it connects several science ideas at once: it gives you a definition you can apply, a quantity you can calculate, and a way to check whether a result is plausible.

How should I study Tomographic reconstruction?

Read the excerpt, restate it from memory, then work through the examples and applications listed on this page. The five-step study plan above takes about twenty minutes.

What does this page cover?

It gives you a compact reference excerpt plus original lgStudy explanations, examples, applications and study material on Tomographic reconstruction.

Tags

  • Inverse problems
  • Medical imaging
  • Multidimensional signal processing
  • Radiology
  • Signal processing
  • Tomography

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