Pleomoviria is a realm of archaeal viruses that encode a unique V-shaped membrane fusion protein and internal membrane matrix proteins that are attached to the viral envelope, which surrounds the genome and has spikes protruding from its surface. Pleomovirian genomes are either circular double-stranded DNA (dsDNA) molecules, linear dsDNA, or circular single-stranded DNA (ssDNA). Regardless of genome type, pleomovirians have a conserved group of core genes that are in the same order. The extracellular particles (virions) of pleomovirians consist of the genome and the envelope. Virions have a pseudo-spherical, pleomorphic shape that is uneven and variable in shape. Pleomovirians do not have a capsid, nucleocapsid, or nucleoproteins. Viruses in Pleomoviria infect archaea through fusion of the envelope with the host cell membrane. The fusion protein, which forms the spikes on the envelope, mediates this process. Pleomovirians do not have a shared replication method, as genome replication occurs through various processes, including rolling circle replication and protein-primed replication. Virions are assembled as the virus buds from the surface of the host cell's membrane, which it uses to form its envelope. Infection is persistent, and virions are continually produced from the cell without lysis. It is common for pleomovirians to become integrated into the genome of their host. Switching between having a dsDNA and ssDNA genome, even if rarely, also appears to occur, as does horizontal gene transfer between pleomovirians and archaeal plasmids. Pleomovirians are not related to viruses outside the realm. Three groups of viruses in the realm have been classified: pleolipoviruses, nanopleoviruses, and thalassapleoviruses. Pleolipoviruses and nanopleoviruses infect archaea that inhabit environments with very high salinity, and thalassapleoviruses infect archaea that live in very high temperature environments. Unclassified pleomovirians have been found that infect methanogenic archaea. The first pleomovirian to be discovered was the pleolipovirus Halorubrum pleomorphic virus 1 in 2009. Thalassapleoviruses were first described in 2024 and nanopleoviruses in 2025. Originally, pleomovirians were classified in the realm Monodnaviria in the kingdom Trapavirae, which was created in 2020. In 2026, Monodnaviria was split into four realms corresponding to its four kingdoms after evidence showed that its kingdoms were not related to each other. This gave Trapavirae its own realm, Pleomoviria.
Classification Pleomoviria is monotypic down to the rank of its sole kingdom, Trapavirae, which has two phyla. This is shown hereafter:
Realm: Pleomoviria Kingdom: Trapavirae Phylum: Calorviricota, which contains thalassapleoviruses Phylum: Saleviricota, which contains nanopleoviruses and pleolipoviruses
Characteristics
Genome Pleomovirian genomes vary in structure. Pleolipovirus genomes have been observed to be circular single-stranded DNA (ssDNA), circular dsDNA, and linear dsDNA. More specifically, alphapleolipovirus genomes are either circular dsDNA or circular ssDNA, betapleolipoviruses have circular dsDNA genomes that may be partly ssDNA, and gammapleolipoviruses have linear genomes with inverted terminal repeats and proteins attached to the end of the genome. Circular ssDNA genomes are 7–11 thousand nucleotides in length, circular dsDNA genomes 8–17 thousand base pairs long, and linear dsDNA genomes about 16,000 base pairs in length. Archaeoglobus veneficus pleomorphic virus 1 (AvPV1), a characterized thalassapleovirus, has a circular dsDNA genome.
Proteins Pleomovirians encode one or two types of spike protein and one or two types of internal membrane protein, These internal membrane proteins are hydrophobic matrix proteins with several predicted transmembrane regions. The spike protein of pleomovirians is an archaea-specific membrane fusion protein with a unique V-shaped folded structure. Additionally, both pleolipoviruses and thalassapleoviruses encode a putative NTPase. Other non-structural proteins encoded by pleolipoviruses include proteins that initiate rolling circle replication in alphapleolipoviruses, a putative type B DNA polymerase in gammapleolipoviruses, and an integrase in some betapleolipoviruses. Thelassapleoviruses similarly encode at least two integrases.
Structure The extracellular virus particles (virions) of pleomovirians consist of the genome contained inside a flexible, pleomorphic lipid membrane vesicle (a viral envelope). The lipids of the vesicle are derived from the host cell membrane, so its composition is similar to the host archaeon's surface membrane. The vesicle is about 40–70 nanometers in diameter and may be round and pseudo-spherical or elongated in shape. The membrane has spikes protruding from its surface that are distributed randomly. These spikes are anchored to the membrane through a C-terminal transmembrane domain. There are also essential membrane proteins on the interior of the envelope. Pleomovirians do not have a capsid, nucleocapsid, or nucleoproteins.
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