Vecchia approximation is a Gaussian processes approximation technique originally developed by Aldo Vecchia, a statistician at United States Geological Survey. It is one of the earliest attempts to use Gaussian processes in high-dimensional settings. It has since been extensively generalized giving rise to many contemporary approximations.
Intuition A joint probability distribution for events A , B {\displaystyle A,B} , and C {\displaystyle C} , denoted P ( A , B , C ) {\displaystyle P(A,B,C)} , can be expressed as
P ( A , B , C ) = P ( A ) P ( B | A ) P ( C | A , B ) {\displaystyle P(A,B,C)=P(A)P(B|A)P(C|A,B)}
Vecchia's approximation takes the form, for example,
P ( A , B , C ) ≈ P ( A ) P ( B | A ) P ( C | A ) {\displaystyle P(A,B,C)\approx P(A)P(B|A)P(C|A)}
and is accurate when events B {\displaystyle B} and C {\displaystyle C} are close to conditionally independent given knowledge of A {\displaystyle A} . Of course one could have alternatively chosen the approximation
P ( A , B , C ) ≈ P ( A ) P ( B | A ) P ( C | B ) {\displaystyle P(A,B,C)\approx P(A)P(B|A)P(C|B)}
and so use of the approximation requires some knowledge of which events are close to conditionally independent given others. Moreover, we could have chosen a different ordering, for example
P ( A , B , C ) ≈ P ( C ) P ( C | A ) P ( B | A ) . {\displaystyle P(A,B,C)\approx P(C)P(C|A)P(B|A).}
Fortunately, in many cases there are good heuristics making decisions about how to construct the approximation. More technically, general versions of the approximation lead to a sparse Cholesky factor of the precision matrix. Using the standard Cholesky factorization produces entries which can be interpreted as conditional correlations with zeros indicating no dependence (since the model is Gaussian). These independence relations can be alternatively expressed using graphical models and there exist theorems linking graph structure and vertex ordering with zeros in the Cholesky factor. In particular, it is known that independencies that are encoded in a moral graph lead to Cholesky factors of the precision matrix that have no fill-in.
Formal description
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